RNA id: TU254545


Basic Information

Item Value
RNA id TU254545
length 216
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G222858
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10129028 ~ 10129243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTATTGTTGTTAAACACCGTAACCCTTGGTGTTGCAGAATAATATTGAATAAACGTTTTTTTGATTCTACTGGTGAAAAGCTGTTATAAGACTCTTCATCCTCCACCACACAACTGTCAAGCAAGGTGAATGTGATAAGATAGTCtcgaccagggatgggcaactttgatatctgaactcatcatgaggggccgcagtaGCTCGCTAGTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254542 lncRNA upstream 4717 10124074 ~ 10124311 (+) True G222855
TU254466 lncRNA upstream 12647 10115928 ~ 10116381 (+) True G222783
TU254459 lncRNA upstream 23807 10099456 ~ 10105221 (+) False G222778
TU254460 lncRNA upstream 24011 10099456 ~ 10105017 (+) True G222778
TU254465 lncRNA upstream 29692 10096183 ~ 10099336 (+) True G222782
TU254573 lncRNA downstream 19806 10149049 ~ 10150148 (+) True G222875
TU254577 lncRNA downstream 23975 10153218 ~ 10153695 (+) True G222879
TU254548 lncRNA downstream 133999 10263242 ~ 10265276 (+) False LOC110508861
TU254549 lncRNA downstream 134154 10263397 ~ 10266860 (+) False LOC110508861
TU254551 lncRNA downstream 134154 10263397 ~ 10265276 (+) False LOC110508861
XM_036968385.1 mRNA upstream 34037 10078045 ~ 10094991 (+) False LOC110508764
XM_021589601.2 mRNA downstream 6648 10135891 ~ 10140365 (+) True LOC110508782
XR_005040844.1 mRNA downstream 51195 10180438 ~ 10197754 (+) False LOC110508830
XM_036968390.1 mRNA downstream 60751 10189994 ~ 10226812 (+) False LOC110508830
XM_036968392.1 mRNA downstream 62137 10191380 ~ 10223511 (+) False LOC110508830
XM_036968397.1 mRNA downstream 62137 10191380 ~ 10223511 (+) False LOC110508830
TU254395 other upstream 215930 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 447276 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 517889 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 622242 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 683324 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 144882 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 182439 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 587408 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 624374 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 624374 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile