RNA id: TU254852


Basic Information

Item Value
RNA id TU254852
length 515
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G223112
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10143309 ~ 10143823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGCTGGAAAAACCAATCCTTGCATCAACGATCCTCCACCTAATTTCACAGTGGGTACGAGACACTGGCTtgtaggcctctccaggtctCGCACCCGCTGTGATATTTGGTGGAGGATCAGCGATGATCTGGGGGTGCTTCAGCAAGGCTTGAATCGggcagatttgtctttgtgaaggacacatgaatcaagccacgtacaaggttgtcctggaagaaaacttgcttccttctgctctgacaatgttccccaactctgaggattggtttttccagcaggacaatgctccatgccacacagccaggtcaatcaaggtgtggatggaggaccaatttgggagaaatgttgtcagtttatagaataaaacaaaaatgttaattTTACCCAAAAACATAGCTATAAATCGTGAAACTGAtaattttgcagtggtctcttaattttttccagagctgtaATATGCACACAGTGGTCTTCTCTAAATACCCATACCAGCGTACTACATACTTAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254820 lncRNA downstream 38284 10099461 ~ 10105025 (-) True LOC110520825
TU254817 lncRNA downstream 53947 10086852 ~ 10089362 (-) True G223081
TU254795 lncRNA downstream 118453 10024459 ~ 10024856 (-) True LOC110520824
TU254787 lncRNA downstream 140415 10001415 ~ 10002894 (-) True LOC110508696
TU254784 lncRNA downstream 143933 9998968 ~ 9999376 (-) True G223058
TU254855 lncRNA upstream 9522 10153345 ~ 10153706 (-) True G223115
TU254899 lncRNA upstream 73638 10217461 ~ 10219349 (-) True G223148
TU254848 lncRNA upstream 81780 10225603 ~ 10260865 (-) True G223108
TU254915 lncRNA upstream 119437 10263260 ~ 10266898 (-) True G223163
TU254922 lncRNA upstream 154638 10298461 ~ 10298666 (-) True G223169
XM_036968381.1 mRNA downstream 14407 10099437 ~ 10128902 (-) False LOC110520825
XM_036968382.1 mRNA downstream 14407 10099437 ~ 10128902 (-) False LOC110520825
XM_021589539.2 mRNA downstream 65917 10074725 ~ 10077392 (-) True rps9
XM_021589496.2 mRNA downstream 70454 10063117 ~ 10072855 (-) True mboat7
XM_021589487.2 mRNA downstream 70455 10063117 ~ 10072854 (-) False mboat7
XM_021589618.2 mRNA upstream 710 10144533 ~ 10151145 (-) True LOC110508790
XM_021589630.2 mRNA upstream 16511 10160334 ~ 10163967 (-) True LOC110508798
XM_021589640.2 mRNA upstream 23961 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA upstream 23961 10167784 ~ 10180249 (-) True flcn
XR_005040846.1 mRNA upstream 47534 10191357 ~ 10191771 (-) True LOC118945753
TU254793 other downstream 120106 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 120124 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 128417 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 140415 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 459938 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 927123 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 1028297 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 1132094 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1583539 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1609028 11752851 ~ 11753680 (-) False G224869

Expression Profile