RNA id: TU254931



Basic Information


Item Value
RNA id TU254931
length 324
lncRNA type intronic
GC content 0.43
exon number 1
gene id G223173
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10307303 ~ 10307626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTCAAGAGAGCATGATGTCAGCGAAATCATACTATCCGGGGGTAAAGCCCATTTTTTCTTTCGATTTCAGAATTTCATTTGTCTGCCATAGTCTATTACAAAATAAGACATTCGTTAAATATCTGGCAACGGGTTTGGGTCGACATCATATTTGTTTTCCTCCATTCGAACCCTTATCCATCCTTGTACTGTATTTATGTTGGAATAAAAAGTGTCGCTGTTCATGGGAGACGCCATTGCGCGCAGTCCGAGGTCCGAATAGCCAAACCCTGTTTCATATCTGTGGATGTACTGCGCATCAATGGACACGACACTCGAACCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU254930 lncRNA downstream 343 10306687 ~ 10306960 (-) True G223172
TU254922 lncRNA downstream 8637 10298461 ~ 10298666 (-) True G223169
TU254915 lncRNA downstream 40405 10263260 ~ 10266898 (-) True G223163
TU254848 lncRNA downstream 46438 10225603 ~ 10260865 (-) True G223108
TU254899 lncRNA downstream 87954 10217461 ~ 10219349 (-) True G223148
TU254933 lncRNA upstream 3528 10311154 ~ 10311493 (-) True G223175
TU254937 lncRNA upstream 6008 10313634 ~ 10314493 (-) True G223178
TU254938 lncRNA upstream 7089 10314715 ~ 10315054 (-) True G223179
TU254939 lncRNA upstream 7524 10315150 ~ 10335177 (-) True G223180
TU254955 lncRNA upstream 32953 10340579 ~ 10340789 (-) True G223193
XM_021589664.2 mRNA downstream 77894 10226896 ~ 10229409 (-) True LOC110508823
XR_005040846.1 mRNA downstream 115532 10191357 ~ 10191771 (-) True LOC118945753
XM_021589640.2 mRNA downstream 127054 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA downstream 127054 10167784 ~ 10180249 (-) True flcn
XM_021589630.2 mRNA downstream 143336 10160334 ~ 10163967 (-) True LOC110508798
XM_036968540.1 mRNA upstream 89438 10397064 ~ 10410486 (-) False pitpnc1b
XM_036968556.1 mRNA upstream 89438 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA upstream 89438 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968546.1 mRNA upstream 89438 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968575.1 mRNA upstream 89438 10397064 ~ 10410492 (-) False pitpnc1b
TU254793 other downstream 284100 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 284118 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 292411 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 304409 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 623932 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 763320 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 864494 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 968291 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1419736 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1445225 11752851 ~ 11753680 (-) False G224869

Expression Profile