RNA id: TU254962


Basic Information

Item Value
RNA id TU254962
length 540
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G223200
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10347589 ~ 10348128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtttattAAATATTCTTACGTATTAAAAGTCAATGACAtacatcatttcaaattccttattagACAGCAcagttttcttttctttttttacggatagccaggggcacaacgcaatgcactcagacatcatttacaaacaaagcatgtgtttagtgagtccgccagatcagaggcagggaTGATGACCACGTATTTCCTTGGTAAGTGTGgcattggaccattttcctgtcctgctaagcactcaaaatgtaacaagtttTGGGTTTCATAGAAAATGTATGATAGTAAAaagtactagagagagagagcgagagagaaaggggaagagaagACAGAGGTAGGTGATGAGGAGTATTATGCTTTGCTGGGAGCATACTAAATGAGTCAGACAACAGACAGCAGGAATACagtggacagacagacggggCATCATCACCTTGTGCAGTTTTAATGTTCAGACCACACAGGGGCGACTTCTGAGTGGTGCCATCGTCAGTTAGACGCTGCATTGGGAGATAGCAGGTCAAACCAGAAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254960 lncRNA downstream 1319 10346035 ~ 10346270 (-) True G223198
TU254958 lncRNA downstream 4889 10341945 ~ 10342700 (-) True G223196
TU254956 lncRNA downstream 6360 10340928 ~ 10341229 (-) True G223194
TU254955 lncRNA downstream 6800 10340579 ~ 10340789 (-) True G223193
TU254939 lncRNA downstream 12412 10315150 ~ 10335177 (-) True G223180
TU254965 lncRNA upstream 6278 10354406 ~ 10354639 (-) True G223203
TU254966 lncRNA upstream 6538 10354666 ~ 10354938 (-) True G223204
TU254967 lncRNA upstream 7262 10355390 ~ 10356030 (-) True G223205
TU254969 lncRNA upstream 10625 10358753 ~ 10363290 (-) False G223207
TU254974 lncRNA upstream 10625 10358753 ~ 10363290 (-) True G223207
XM_021589664.2 mRNA downstream 118180 10226896 ~ 10229409 (-) True LOC110508823
XR_005040846.1 mRNA downstream 155818 10191357 ~ 10191771 (-) True LOC118945753
XM_021589640.2 mRNA downstream 167340 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA downstream 167340 10167784 ~ 10180249 (-) True flcn
XM_021589630.2 mRNA downstream 183622 10160334 ~ 10163967 (-) True LOC110508798
XM_036968540.1 mRNA upstream 48936 10397064 ~ 10410486 (-) False pitpnc1b
XM_036968556.1 mRNA upstream 48936 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA upstream 48936 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968546.1 mRNA upstream 48936 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968575.1 mRNA upstream 48936 10397064 ~ 10410492 (-) False pitpnc1b
TU254793 other downstream 324386 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 324404 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 332697 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 344695 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 664218 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 722818 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 823992 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 927789 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1379234 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1404723 11752851 ~ 11753680 (-) False G224869

Expression Profile