RNA id: TU254974


Basic Information

Item Value
RNA id TU254974
length 4311
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G223207
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10358753 ~ 10363290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAATGTAGCTTCCATTGGTTACAATTCATGATCCCTTTTTCTTATCAATAATTTGCCATCAATCACCTCCAGTAAGGACATTTACTGGGACATCCTGATCAGACACAAGACAATGAGACAGTGGATGGGAAATCTATTAAGACTTTTAATTTCTTCATGTTTTTTACAATACAATTTGAACACGTATTGATAACATTTTGCCTGAATAAGTTACatattaattaaataaatacaattaaatacTGATTTATTTTTGCCATTGGGTCATCCCCACACTATCTGGTTACAGTACTAGGATGAGATGAAGAAAGATTAGACAGTGATGTTATCAATCTGAAGATTATTCAGGAAGTTATCAGCATTGGAAGACATATTGAACTCCCAATGAATGGAGCTGACTGAAACAATGGCAACAGTTGTTTCTGATACTTCCTGATCTTGATTATGACAATGTCTCAGTCTCATCCCTCTTTGTCTCATTCTGGTTACAGAAAGCCTCAAGGGGGAAAGAAATACCttcacaacacagacagacaggaaggggGAAGGATCAGGCATTTGCAGCATAGCTTCACCTAGTCTCCTGTTGCTTTTCCTGGAATAACCTAGCATAGACAGTTCTcccaaccaacccaccaacctcTCCAATGATTCTGAAAGTGATACACTCCTAACATAAGTCAGGTGATATCAGCACAGATGTAGGGGAAGAGAATGATTCAGATGAAAACCAGCATGCACAGTGGTTGTCCAGGACCAGACAGAGTACAGTAGGCCTAAAGCATCTCCATTCACAAGAGGTAGCATGTTACTCTCCCGCGTTTCTCTCTCTTATCATCCTAAATGCAGCAGACAGAGAACGTGTTTGACCACCGGTTGTCCAGGACCAGACAGAGTACAGTAGGCCTAAAGCATCTCCATTCACAAGAGGTAGCATGTTACTCTCCCGCGTTTCTCTCTCTTTCGCAGCCGACAGAGAACGTGTTTGACCACTGTGATTATCACGGTTGTCAGTCTGTCCGATTGTCACCATTCAACATGGTTTTCTACAGTTCTACGGTGAAAGCTGCTCGTGAAATGCTTCAACATGAAAGCTTGGCAGATGATTGGTAACTCTGCTTAGAAGCACCTGCTGCTAACTTGTTGTTCCCTACAAGTGCTGTTTTGAATTCAAATACATTTGTACCTACACACTGAAGAAGGCTGTGAAGCTGAAACGTCTGTGTATGCTATCCCTGATGCAGTGAAAACCGTCAAATGAACTAAGCTTTATGCAACATCTTGTTGAGTGAGGACCCATTACACCATTTTGTTTAGAGTAACgacaagacagagatatgggggCCTGGTATTTCCCAATGGCTGTGCCCTTCACGTACAGCATATTGCACTTAGCGCAGTGGTTATTATGCAGAGACTGGGTGGGGAACATCAGaaccatatatatataaataaatgtctcTGGGGAACATTAGTAAGATCACAGTTTGTTGTTAATGGTCTTTAAGAAGGGTGTCGAGTCAGCTAGGAGGTTAGGAAAGCACACTATGTGTTGTATTCTCCCAATGAACATAACACAGGCCTGGTCCaaaaacaacccctagcccctacacccCTTTGGTTTTCTAATCTACATGAACCAGATAGGCAGAAGAAATATGGCAGAAGTTCCCCTAAGCCTATTGGAAGGCTAGGTGGAGCCGTCACCATACTGCTAACCGAGGCTGTGGGTTGCTCTCAGGCCAGGCCATAATCAGTGCTCACATACTTCACTAATTGACAGGCCATGCAACTAATCTGAATCACAACAGCTGAATTAAGTCTGTCATGACCTCAGAACCATTGGATCTGGTAGAACATCATGTGGAATAGAGAATAATATCTGCTCTGTAAATACTGAACGTTCTGACCCTGAGAATAAGCCCTTGGACTGCCTTGTCAATCACTGATAGCACGGAAACACAGACAACTTCATCATGATCCATGTTAGGGAGAAGTACAGTATTCACCTCCTCAGATCTTTTCTGATGGGACACCCCTGGTGGTCATTTAAAATGAATATGGCCAATCCCATGCGGACCCCTAGCCTCTAGCCCCTCGTACCAGGGCACAACTTCTAGTAGGCTGGATAGCTGTGAGCGATATGGGGAAAGTTCCACATAGCCTATCAGGGGAATGGTAGAGCTATTACCATATTGATTATATCTATCCAGTTCTATCCTCCTCATGTgcctagggggtaggggttagaggttgaTTTGGAACTGGCCAAGAGAGAGATTGTGGTCTCAGGGAACACCTGTGTCATTTCCTGCAATCAGAACAGCCTCCCTTTGGGACAGATTTatttcctgattctacctgtTTTTACAGTATGGGATAAAGCACTGAAAAAATCTTAAGCTAAAATCATGAAATTGTTTCATGAAATTAATTGCCATTGTTATCCTGCGCATAACCTTTATTTGACCTTTTTATCTCCATATCAACAGGTGTAAACAGTGACTGTGGCCCTTACAGTGTGTAGAGCACCAAGCTGTTTCCTCCAAACACTGTGGGAGGTCCTCATAAAACAGTGGCCACCTGTTCTCATACGCTGATGAGAACATACACTCTGGTAATATGGTCGTGTTGCAGGCTCTGAAGCCTCTCAGAGTGATTGCTATTTATCTCTTGGCTTAATAGGatgtttacagtttttttttctctcttaaataaaaaaaagactaGCATTGAATTGAACATAGTGGTTCATTAGGTTTTAGTGACCCCCTCACAGTGTTATATATTACAGCAACAGACTAGTGTTGAGACCACAATTAAAATAGGCACGAAATGTGGAAGCggctttgctctctctcttctctctctcgctctctctctctctctctctctctctctctctctctctcacagatcAACTGTACAAAATCAACACTCAGAGACATTGCACACTTAGTCTACACAAAGTAGGAGCTCCAAGTATATTTGCAACAATTCAGATAAatatacaatgtgtgtgtgtattaacacacacacacacattgtatatTTATCTGAATTGTTGCCAATATACttgtattaacacacacacacctacacaaacaGAAGCAGCCAGGCATGCACATACCACACAACCCTTACAGGGAAGTGTGtctgccagctctctctctccacatgccGACTGTGTGTCTGGCACTAGGGGAAAGGTCTGGAGACATGTACAAGCtgtgtgctctgtctgtctgcccagtCTGGCTTTAATGGCCTTTATGAATGACTCGGACTCAATGACTGTGGCTGGGGGAACAGTAGGGGCCCTGTTCAACTGGGTTTCTTTGTTTACAGTGGGAAACAATGTGttggattgtgtgtgtgactcCAAATATGCATTGTTCATTTGTTGTATTTggccattttttatttaacaggaCAACccaaggtttgtgtgtgtgtgattccctCTGCCAGTTATTGTTCCACCAATGCAACTCTATCTTTTTTCATCTCTTCCAATGCAGCAGCATCTGTCTCTCGACATTGCGTGGGGTACAGACCTGCAGTCACCTCTCTCAGACTACTCACTCACAGAGTGGACagaggggatggatggatagacTGATGGATGGACATTCACAAATCTGTTCCCATTGTTTGGGAGGTGTATGTTTAAGTccgactaacacacacacacacacacacacatacaaacacacctaAGACCTTCACCACTGCTCCACCATGAGATCCAACGCTCGGTTGACGTTCAGATCCGAATTGAGGCCAAAGTCGGTCTCAACGAATGGGGCAGATGGAGGACTGAGAGGGCGGAGTCCAGAGGCTAGCGACCCCAACCAATCAGCAGGGTCAAAGGTTGCCTGAACCCGCCTCTTCCGTGAGGTCACAGTGGGAGGCAGGGGAGAAGtacagatggggagagggggtggggcgGCTTGGCGGGGAACCATCGTCGAAGGCGACGGCGGGAGCTCCAGCAAtaaggaggagcagagaggagaggataggaagtTGTCATCCTTTGAATGACAACGGAAAGGCTGGGACTGGTCTgtttggggaggagaggaggggccgGGGAGGATAGTGACAGGGGATTGGAGGTCtgagacagaggaggagtgggagtctAGAAGAAAGGTGTAGGgcaatacaaacaaacaaacaaacaaaagctTGTAATTATCCATGACCAGTCTTGGTGACTACAGAACTATACATTGTCATTGAGAGGCCAGAGAGCTATCCACTCACCCACACAGGTGGTAGGTTCCTCCAGAATGTCCTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254967 lncRNA downstream 2723 10355390 ~ 10356030 (-) True G223205
TU254966 lncRNA downstream 3815 10354666 ~ 10354938 (-) True G223204
TU254965 lncRNA downstream 4114 10354406 ~ 10354639 (-) True G223203
TU254962 lncRNA downstream 10625 10347589 ~ 10348128 (-) True G223200
TU254960 lncRNA downstream 12483 10346035 ~ 10346270 (-) True G223198
TU254975 lncRNA upstream 1150 10364440 ~ 10364644 (-) True G223208
TU254989 lncRNA upstream 23812 10387102 ~ 10387372 (-) True G223222
TU254992 lncRNA upstream 28182 10391472 ~ 10391701 (-) True G223225
TU254994 lncRNA upstream 28810 10392100 ~ 10392312 (-) True G223227
TU254997 lncRNA upstream 31188 10394478 ~ 10394801 (-) True G223230
XM_021589664.2 mRNA downstream 129344 10226896 ~ 10229409 (-) True LOC110508823
XR_005040846.1 mRNA downstream 166982 10191357 ~ 10191771 (-) True LOC118945753
XM_021589640.2 mRNA downstream 178504 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA downstream 178504 10167784 ~ 10180249 (-) True flcn
XM_021589630.2 mRNA downstream 194786 10160334 ~ 10163967 (-) True LOC110508798
XM_036968540.1 mRNA upstream 33774 10397064 ~ 10410486 (-) False pitpnc1b
XM_036968556.1 mRNA upstream 33774 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA upstream 33774 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968546.1 mRNA upstream 33774 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968575.1 mRNA upstream 33774 10397064 ~ 10410492 (-) False pitpnc1b
TU254793 other downstream 335550 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 335568 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 343861 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 355859 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 675382 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 707656 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 808830 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 912627 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1364072 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1389561 11752851 ~ 11753680 (-) False G224869

Expression Profile