RNA id: TU255058


Basic Information

Item Value
RNA id TU255058
length 410
lncRNA type intronic
GC content 0.40
exon number 3
gene id G223276
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10470406 ~ 10514299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttagaaagagagaaacagggttaGGCAGAAAGATAAAGGGTTAGGCAGAAAGATacaggttaggaagagagatacagggttaaaaagagagattcaggtttagaaagagagatacagggttaaaaagagagatacaggtttagaaagagagatacaggtttactaagagagatacagggttaggaagagagaatACAGGTTTGGAAACAGAGATAAAGGGTTAAAAatagagattcagggttagaaagagagatacagggttaggaagagagatgcagggttaggaagagaaatacagggttaggaagagagatacagtgttaggaagagagatacagggttaggaagagagatacaggtttagaaagagagatacagggttaggaagagagatacagggttaggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255015 lncRNA upstream 59937 10409843 ~ 10410469 (+) True G223238
TU255006 lncRNA upstream 73260 10396369 ~ 10397146 (+) False G223232
TU255001 lncRNA upstream 73260 10396550 ~ 10397146 (+) True G223232
TU254995 lncRNA upstream 76826 10393379 ~ 10393580 (+) True G223228
TU254993 lncRNA upstream 78146 10392037 ~ 10392260 (+) True G223226
TU255084 lncRNA downstream 7322 10514385 ~ 10514638 (+) True G223283
TU255149 lncRNA downstream 118574 10625637 ~ 10637350 (+) True G223339
TU255156 lncRNA downstream 128542 10635605 ~ 10641319 (+) True G223344
TU255161 lncRNA downstream 142253 10649316 ~ 10649743 (+) True G223349
TU255162 lncRNA downstream 143758 10650821 ~ 10651143 (+) True G223350
XM_036968518.1 mRNA upstream 106733 10340929 ~ 10363673 (+) False LOC110508924
XM_036968528.1 mRNA upstream 106733 10340929 ~ 10363673 (+) False LOC110508924
XM_036968533.1 mRNA upstream 106733 10340929 ~ 10363673 (+) True LOC110508924
XM_021589775.2 mRNA upstream 155871 10306848 ~ 10314535 (+) False LOC110508886
LOC110520828 mRNA upstream 164207 10295464 ~ 10306199 (+) True LOC110520828
XM_036968582.1 mRNA downstream 154027 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA downstream 154027 10661090 ~ 10701728 (+) False prkcg
XM_036968585.1 mRNA downstream 209550 10716613 ~ 10752817 (+) False LOC110520833
XM_036968589.1 mRNA downstream 262575 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA downstream 262575 10769638 ~ 10827121 (+) False cacng8b
TU254625 other upstream 158154 10311682 ~ 10312252 (+) True LOC110508886
TU254560 other upstream 194233 10274125 ~ 10276173 (+) True LOC110508845
TU254395 other upstream 557308 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 788654 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 859267 9606305 ~ 9611139 (+) True G222345
TU255198 other downstream 209588 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 246554 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 246554 10753617 ~ 10767669 (+) False LOC110520833
TU255286 other downstream 262610 10769673 ~ 10826411 (+) False cacng8b
TU255285 other downstream 319452 10826515 ~ 10827279 (+) True cacng8b

Expression Profile