RNA id: TU255445


Basic Information

Item Value
RNA id TU255445
length 467
lncRNA type intronic
GC content 0.40
exon number 2
gene id G223521
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10501912 ~ 10503948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctttctaaccctgtatctctcattctaaccctgaatctctcttcctaacaCTGAATCTCcctctaaacctgtatctctctttctaaacctgtatttgtctttttaaccctgtatctctctttctaaacctgtatctctctttttacccctgtatctctctttctaaacctgtatatCTCTTCCTAacactgtatctctcttcctaaccctgtatctctctttctaaacctggatctctctttctaaacctgtatctctcttgctaaccctgtatctctcttgctaaccctgtatctctcttgctaaccccgtatctctcttcctaaccctgtatttctctttctaaccctgtatctctcttcctaaccctgtatctctcttcctaaccctgtatctctcttcctaaccctgtatctcttcctaaacctgtatctctcttcctaacctgtatctctcttcctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255428 lncRNA downstream 2865 10474127 ~ 10499047 (-) False G223508
TU255427 lncRNA downstream 2865 10474827 ~ 10499047 (-) True G223508
TU255442 lncRNA downstream 9353 10489981 ~ 10492559 (-) True G223519
TU255435 lncRNA downstream 12721 10488255 ~ 10489191 (-) True G223514
TU255438 lncRNA downstream 19482 10481495 ~ 10482430 (-) True G223515
TU255451 lncRNA upstream 13723 10517671 ~ 10517991 (-) True G223527
TU255453 lncRNA upstream 14441 10518389 ~ 10574057 (-) True G223529
TU255455 lncRNA upstream 15848 10519796 ~ 10523242 (-) True G223531
TU255487 lncRNA upstream 61946 10565894 ~ 10566998 (-) True G223560
TU255527 lncRNA upstream 146949 10650897 ~ 10651286 (-) True G223596
XM_036968571.1 mRNA downstream 88840 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 91420 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 91423 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 91425 10397064 ~ 10410487 (-) False pitpnc1b
XM_021589877.2 mRNA upstream 327618 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 349754 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 349754 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 349754 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 349754 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 478709 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 478727 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 487020 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 499018 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 818541 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 566998 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 668172 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 771969 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1223414 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1248903 11752851 ~ 11753680 (-) False G224869

Expression Profile