RNA id: TU255084


Basic Information

Item Value
RNA id TU255084
length 254
lncRNA type intronic
GC content 0.44
exon number 1
gene id G223283
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10514385 ~ 10514638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GgcccaaatatatacagttgggaaGAGAAAACCTCTCCCAACATTGAGAACCAATCAGTGATCAGTTCAATCATCCCAACCAACCTGGGACACAGTAAAAACAGATGTGCCAGAGATTCATACTCAGCACAGAATGGACACTCCTCCCCAACAGTAgggtccaggtgtaccagatgcttGTTGGTGGCTATAGCTCCATGTATTATCCATTGGAGGTCAGCTGTCCTCTTATCAATAGGCAGTTTATATAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255054 lncRNA upstream 86 10474523 ~ 10514299 (+) False G223276
TU255071 lncRNA upstream 86 10481228 ~ 10514299 (+) False G223276
TU255068 lncRNA upstream 86 10505307 ~ 10514299 (+) True G223276
TU255058 lncRNA upstream 7322 10470406 ~ 10507063 (+) False G223276
TU255073 lncRNA upstream 7322 10481272 ~ 10507063 (+) False G223276
TU255149 lncRNA downstream 110999 10625637 ~ 10637350 (+) True G223339
TU255156 lncRNA downstream 120967 10635605 ~ 10641319 (+) True G223344
TU255161 lncRNA downstream 134678 10649316 ~ 10649743 (+) True G223349
TU255162 lncRNA downstream 136183 10650821 ~ 10651143 (+) True G223350
TU255030 lncRNA downstream 186224 10700862 ~ 10701485 (+) True prkcg
XM_036968518.1 mRNA upstream 150712 10340929 ~ 10363673 (+) False LOC110508924
XM_036968528.1 mRNA upstream 150712 10340929 ~ 10363673 (+) False LOC110508924
XM_036968533.1 mRNA upstream 150712 10340929 ~ 10363673 (+) True LOC110508924
XM_021589775.2 mRNA upstream 199850 10306848 ~ 10314535 (+) False LOC110508886
LOC110520828 mRNA upstream 208186 10295464 ~ 10306199 (+) True LOC110520828
XM_036968582.1 mRNA downstream 146452 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA downstream 146452 10661090 ~ 10701728 (+) False prkcg
XM_036968585.1 mRNA downstream 201975 10716613 ~ 10752817 (+) False LOC110520833
XM_036968589.1 mRNA downstream 255000 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA downstream 255000 10769638 ~ 10827121 (+) False cacng8b
TU254625 other upstream 202133 10311682 ~ 10312252 (+) True LOC110508886
TU254560 other upstream 238212 10274125 ~ 10276173 (+) True LOC110508845
TU254395 other upstream 601287 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 832633 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 903246 9606305 ~ 9611139 (+) True G222345
TU255198 other downstream 202013 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 238979 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 238979 10753617 ~ 10767669 (+) False LOC110520833
TU255286 other downstream 255035 10769673 ~ 10826411 (+) False cacng8b
TU255285 other downstream 311877 10826515 ~ 10827279 (+) True cacng8b

Expression Profile