RNA id: TU255487


Basic Information

Item Value
RNA id TU255487
length 909
lncRNA type intronic
GC content 0.42
exon number 3
gene id G223560
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10565894 ~ 10566998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGAtggaaggtggagagagaaggatttatacaGTACTGTGAGaaaagagatgggaggagagagagagaaggatttatacagtactgtgaggaaagagatgggaggagagagagagaaggatttatacaGAACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacaGTACTGTGAGaaaagagatgggaggagagagagagaaggatttatacaGAACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacaGTACTGTGAGaaaagagatgggaggagagagagagaaggatttatacaGTACTGTGAAaaaagagatgggaggagaaagagagaaggatttatatAGTACTGTGAGaaaagagatgggaggagagagagagaaggatttatacagtactgtgaggaaagagatggaatgtggagagagaaggatttatacaATACTGTGAGGAAAGAGATGGAAGGTGGGGAGAGAAGGATTTATACAGTACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacaATACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacagtactgtgaggaaagagatggaaggtggagagagaaggatttatacaATACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacagtactgtgaggaaagagatggaaggtggagagagaaggatttatatagtattgtgagaaaagagatgggaggagagagagagaaggatttatacaATACTGTGAGGAAAGAGAtggaaggtggagagagaaggatttatacaGTATCTTgaactccaagatcgcatagcagttcagacgtcttttgtccttgtcgtgtcctgtatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255455 lncRNA downstream 42652 10519796 ~ 10523242 (-) True G223531
TU255451 lncRNA downstream 47903 10517671 ~ 10517991 (-) True G223527
TU255445 lncRNA downstream 61946 10501912 ~ 10503948 (-) True G223521
TU255442 lncRNA downstream 73335 10489981 ~ 10492559 (-) True G223519
TU255435 lncRNA downstream 76703 10488255 ~ 10489191 (-) True G223514
TU255527 lncRNA upstream 83899 10650897 ~ 10651286 (-) True G223596
TU255528 lncRNA upstream 87831 10654829 ~ 10655101 (-) True G223597
TU255530 lncRNA upstream 88467 10655465 ~ 10659541 (-) False G223598
TU255531 lncRNA upstream 88467 10655465 ~ 10658363 (-) True G223598
TU255533 lncRNA upstream 92889 10659887 ~ 10660235 (-) True G223600
XM_036968571.1 mRNA downstream 152822 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 155402 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 155405 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 155407 10397064 ~ 10410487 (-) False pitpnc1b
XM_021589877.2 mRNA upstream 264568 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 286704 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 286704 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 286704 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 286704 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 542691 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 542709 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 551002 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 563000 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 882523 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 503948 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 605122 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 708919 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1160364 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1185853 11752851 ~ 11753680 (-) False G224869

Expression Profile