RNA id: TU255530


Basic Information

Item Value
RNA id TU255530
length 920
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G223598
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10655465 ~ 10659541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttattcagtggaatggagatagggaatagtactgttattcagtggaatggagatagggaacagtactgttattccagtggaatggagatagggaatagtactgttattcagtggaatggagatagggaatagtactgttattcagtggaatggagatggagaatagtactgttattccagtggaatggagatagggCATAGTACTCTTATTCCAGTGGAATGGAGATGGGGAATAGCACTGTTAttccagtggaatggagatagggaatagtactgttattcagtggaatggagatagggaATAGTACGGTTTTTCAGTGGATTGGAgatagggaatagtactgttattcagtggaatggagatagggaATAGTACGGTTTTTCAGTGGATTGGAgatagggaatagtactgttattcagtggaatggagatagggaatagtactgttattcagtggaatggagatagggaatagtactgttattccagtggaatggagatagggaatagtactgtttttcagtggaatggagatagggaacagtactgttattcagtggaatggagatagggaATAGTGCTGTTATTCAGTGGATTGGAGATAGGGAACAGTACTGTTATTCCAGTGGAATGGTGATAGGGAACAGTACTGTtattcagtggaatggagatggggaatagtactgttattccagtggaatggagataggaaatagtactgttattccagtggaatggagatagtgattagtactgttattccagtggaatggagatagggaATCGTACTGTgattcagtggaatggagatagggaatcgtactgttattccagtggaatggagatagtgattagtactgttattccagtggaatggagatagggaATCGTACTGTgattcagtggaatggagataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255528 lncRNA downstream 364 10654829 ~ 10655101 (-) True G223597
TU255527 lncRNA downstream 4179 10650897 ~ 10651286 (-) True G223596
TU255453 lncRNA downstream 81408 10518389 ~ 10574057 (-) True G223529
TU255487 lncRNA downstream 88467 10565894 ~ 10566998 (-) True G223560
TU255455 lncRNA downstream 132223 10519796 ~ 10523242 (-) True G223531
TU255533 lncRNA upstream 346 10659887 ~ 10660235 (-) True G223600
TU255534 lncRNA upstream 767 10660308 ~ 10660739 (-) True G223601
TU255570 lncRNA upstream 37718 10697259 ~ 10698562 (-) True G223627
TU255615 lncRNA upstream 117778 10777319 ~ 10779976 (-) False G223652
TU255616 lncRNA upstream 118340 10777881 ~ 10779976 (-) False G223652
XM_036968571.1 mRNA downstream 242393 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 244973 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 244976 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 244978 10397064 ~ 10410487 (-) False pitpnc1b
XM_021589877.2 mRNA upstream 172025 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 194161 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 194161 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 194161 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 194161 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 632262 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 632280 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 640573 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 652571 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 972094 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 411405 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 512579 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 616376 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1067821 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1093310 11752851 ~ 11753680 (-) False G224869

Expression Profile