RNA id: TU255616


Basic Information

Item Value
RNA id TU255616
length 475
lncRNA type intronic
GC content 0.53
exon number 3
gene id G223652
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10777319 ~ 10779976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagactgggggacactggagagagactgaagagagactggagagagacttgGGAGAGACttgggagagactggagagagactggagagagagtaagagagagactggagagagactggagagacttgggggagacagggggagactggtgggagactgaagagagactgaagagagactgaagagagacttgggagagactggagagagagtaagagagagactggggagagactggagagagactgaagagagactgacgagagactgaagagagactgggggagagactggagagactggaggaaAGACttgggagagactggagagagactggagagagagtaagagagagactggggagagactggagagagaatgaagagagcctgtgggagagactggagagactggataAAGAGTTGGGAGAgactgaagagagactgaagagagactgggggagagacttgggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255570 lncRNA downstream 79319 10697259 ~ 10698562 (-) True G223627
TU255534 lncRNA downstream 117142 10660308 ~ 10660739 (-) True G223601
TU255533 lncRNA downstream 117646 10659887 ~ 10660235 (-) True G223600
TU255530 lncRNA downstream 118340 10655465 ~ 10659541 (-) False G223598
TU255660 lncRNA upstream 47432 10827408 ~ 10829310 (-) True G223688
TU255674 lncRNA upstream 68432 10848408 ~ 10848704 (-) True G223702
TU255675 lncRNA upstream 68970 10848946 ~ 10849353 (-) True G223703
TU255679 lncRNA upstream 122585 10902561 ~ 10902795 (-) True G223707
TU255682 lncRNA upstream 130260 10910236 ~ 10910496 (-) True G223710
XM_036968571.1 mRNA downstream 364809 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 367389 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 367392 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 367394 10397064 ~ 10410487 (-) False pitpnc1b
XM_021589877.2 mRNA upstream 51590 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 73726 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 73726 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 73726 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 73726 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 754678 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 754696 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 762989 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 774987 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1094510 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 290970 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 392144 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 495941 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 947386 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 972875 11752851 ~ 11753680 (-) False G224869