RNA id: TU255290


Basic Information

Item Value
RNA id TU255290
length 470
lncRNA type intronic
GC content 0.49
exon number 3
gene id G223385
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10777883 ~ 10779973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccaagtctctcccccagtctctcttcagtctctcttcagtcTCTCCCAACTCTTtatccagtctctccagtctctcccacaggctctcttcattctctctccagtctctccccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTttcctccagtctctccagtctctcccccagtctctcttcagtctctcgtcagtctctcttcagtctctctccagtctctccccagtctctctcttactctctctccagtctctcccaagtctctcttcagtctctcttcagtctctcttcagtctcccaccagtctccccctgtctcccccaagtctctccagtctctctccagtctctctcttactctctctccagtctctctccagtctctcccaaGTCTCTCCcaagtctctctccagtctctcttcagtctctctccagtgtcccccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255229 lncRNA upstream 10938 10756130 ~ 10767669 (+) False LOC110520833
TU255284 lncRNA downstream 47416 10827389 ~ 10829316 (+) True G223381
TU255324 lncRNA downstream 67672 10847645 ~ 10847885 (+) True G223414
TU255332 lncRNA downstream 77580 10857553 ~ 10857877 (+) True G223421
TU255335 lncRNA downstream 88354 10868327 ~ 10872184 (+) True G223424
TU255358 lncRNA downstream 120623 10900596 ~ 10900908 (+) True G223441
XM_036968585.1 mRNA upstream 25790 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 76879 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA upstream 76879 10661090 ~ 10701728 (+) False prkcg
XM_036963819.1 mRNA upstream 173551 10431758 ~ 10605056 (+) True LOC110520829
XM_036968533.1 mRNA upstream 414934 10340929 ~ 10363673 (+) True LOC110508924
XM_021589928.2 mRNA downstream 96823 10876796 ~ 10878635 (+) False LOC110508993
XM_036968638.1 mRNA downstream 133108 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 161808 10941781 ~ 10944125 (+) True isoc2
XM_021623014.2 mRNA downstream 165652 10945625 ~ 10947532 (+) True foxj2
XM_036968716.1 mRNA downstream 202847 10982820 ~ 10995885 (+) False LOC110537149
TU255234 other upstream 10938 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other upstream 10938 10753617 ~ 10767669 (+) False LOC110520833
TU255198 other upstream 28204 10716651 ~ 10750403 (+) False LOC110520833
TU254625 other upstream 466355 10311682 ~ 10312252 (+) True LOC110508886
TU254560 other upstream 502434 10274125 ~ 10276173 (+) True LOC110508845
TU255285 other downstream 46542 10826515 ~ 10827279 (+) True cacng8b
TU255328 other downstream 73729 10853702 ~ 10856200 (+) False G223418
TU255329 other downstream 73729 10853702 ~ 10856200 (+) True G223418
TU255340 other downstream 96784 10876757 ~ 10878534 (+) True LOC110508993
TU255351 other downstream 170176 10950149 ~ 10952739 (+) True G223434