RNA id: TU255328


Basic Information

Item Value
RNA id TU255328
length 1927
RNA type TUCP
GC content 0.43
exon number 6
gene id G223418
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10853702 ~ 10856200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGTTTTAGCCATTTTTTATTCCATTAATTCACTTAAGAAATCACATTTCCCTGGTACTGTCCAACTCTAGGTCTGAACACAAAGCATCATGGGAACTCCCTCTCAACCCCAGTGTAACCAGTGGTCCTTGGAGTCGTAATGACAAAGGTTGAGGGAGATGAGGAAGAAGTGAGACCATATATACAGTTGAGGGGACAACCTTTTGATGAGTATGAACATTGTTGAACAGTCCAATAGAACACTTGAGAACCTGTCCAAAAGACTGCACTCCCCTTCAGTTAAAAAAAACATCTGTTTAACATCTCCATCTCACCCTTTGTGACAACAAACCCATTACTTAACAGAAGAGGTGTACAATCACACAATACTACCTGACTTCTATGGTTACTAAAAGCCTGATAACTTGGTCAAAGTAAATAGTGCATTTTATTTGTGGGCAGTAGAACAGGAAACAGTGGTATTAGTCTTTATACCTTTATTTTGTCTGCTGAGGTGAGAAGTTACACAAACACTACCTGGGCCAAAGAGATTTCTGTATGAGCAGTCCAATATTCTATAGGTAGGTTTGAAACAGGAAGCAAAACAAAAGAAACTAATTCCAGACAAAGAAATACAACTTGAATACTGACTACAACCTTAAATCATTGTTACCTGAAAATACCAAAGCATGAAATGACTCCATGTATTGACAAACTTGCTAAGCACAGACATGAATGAGTACTCCATATATTTTTATCTTGAATGTGACATGAAAAATAGCAAGGCTTTTAATCAGAATCAGATCGAGCCCTACTCAACACCAATCCAATATTTACCACTCACAATTCAAAAATAACAACTCAGAACTTCAAAAGTCTGCCTttcccctctcccagtctcttatGGGtaagggtagggtgtagggacaGAATTATTTTGCCTGCTAAAAATGGCGATGGATAaattcaaactagatgaaaggttTCAatccaaaaacaaaaaaaaacatcaaagaCACAGACAGTAATAAAAACGTATGGTACTCAAACTTTAAGGTGTGACAGTATAAACCACAACAGCTGACATTCAGATAAATTAGTCCAATATGACATTGGAGTTGGTTATGTGTAGTTACAGCTTCTCCCCCTCTCgctacacacacagggagaggggctTAGTCTGATGTACATGGAAGAAAAGAAACAAGGAAATCTAAAGGTCCAAATCTGAGAAATAAAAATCGCAAAACGAGGCCATTCCTGTCAATAGCTTTCCATCCTATCCTGTCAATAGCTTTCCATCTTTCCTTCCCCTTTTTCACAACAAGAAACTGACCATGTTATCTACATTGGTGGGCCAAATAAAAACTGTCACCAACTCCCTCTCCCCATATGAAATGATGAATACTCctgtccatccatctatccaccaCTCTTATAGAGTAGACCAGTCCACTTCCCCCTCTCTACACCTTCCCAAAGTACTTAAAACAGGCTCCCTCCATTTAAATACAAACCATAAGGTGTGACAATCCACCCCCCCCCTCGCTATCCTCGTCTGTCGTCATCCTCTACCAGAAGTCTCGGCGGTGGTAGGCATCAGGGTCGCAGTATTTGGTCACCACCACCCGGTTAGCAAACTTCCTGCCCGTCAGACCCTGCATGGCCTTCTGGGAGTCAAACACTGACATGAACTCCACAAAGAtcttgccAGTGCCAGGGACCTCCAGCCCATCCACAGGTCTGGGGATCTCGATGCTCTTGACCTGGCCGTACTTGCTGCACTCGTCCCTCACATCCTCCACGATCTCCTCATATTCCTCTTCATCCaccagctcctccacagccaccaTATTCATCAGACACAGCACCTCTGTGGGCAGGCCGGCCATCTGTGTCATTGAGCTGTTCATCAGGCCCGGCACCTGCAGCGTCACCGGGGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255324 lncRNA upstream 5817 10847645 ~ 10847885 (+) True G223414
TU255284 lncRNA upstream 24386 10827389 ~ 10829316 (+) True G223381
TU255288 lncRNA upstream 73729 10777883 ~ 10779973 (+) False G223385
TU255292 lncRNA upstream 73729 10777883 ~ 10779973 (+) False G223385
TU255290 lncRNA upstream 73729 10778607 ~ 10779973 (+) False G223385
TU255332 lncRNA downstream 1353 10857553 ~ 10857877 (+) True G223421
TU255335 lncRNA downstream 12127 10868327 ~ 10872184 (+) True G223424
TU255358 lncRNA downstream 44396 10900596 ~ 10900908 (+) True G223441
TU255361 lncRNA downstream 46979 10903179 ~ 10903526 (+) True G223444
TU255366 lncRNA downstream 53252 10909452 ~ 10909682 (+) True G223449
XM_036968589.1 mRNA upstream 26581 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA upstream 26581 10769638 ~ 10827121 (+) False cacng8b
XM_036968585.1 mRNA upstream 100885 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 151974 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA upstream 151974 10661090 ~ 10701728 (+) False prkcg
XM_021589928.2 mRNA downstream 20596 10876796 ~ 10878635 (+) False LOC110508993
XM_036968638.1 mRNA downstream 56881 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 85581 10941781 ~ 10944125 (+) True isoc2
XM_021623014.2 mRNA downstream 89425 10945625 ~ 10947532 (+) True foxj2
XM_036968716.1 mRNA downstream 126620 10982820 ~ 10995885 (+) False LOC110537149
TU255285 other upstream 26423 10826515 ~ 10827279 (+) True cacng8b
TU255286 other upstream 27291 10769673 ~ 10826411 (+) False cacng8b
TU255234 other upstream 86033 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other upstream 86033 10753617 ~ 10767669 (+) False LOC110520833
TU255198 other upstream 103299 10716651 ~ 10750403 (+) False LOC110520833
TU255340 other downstream 20557 10876757 ~ 10878534 (+) True LOC110508993
TU255351 other downstream 93949 10950149 ~ 10952739 (+) True G223434
TU255732 other downstream 137858 10994058 ~ 10995415 (+) True LOC110537149
TU255727 other downstream 180077 11036277 ~ 11041260 (+) True mfap5
TU255730 other downstream 185648 11041848 ~ 11043692 (+) True G223748

Expression Profile