RNA id: TU255335



Basic Information


Item Value
RNA id TU255335
length 345
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G223424
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10868327 ~ 10872184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctctctgcctctccctggtGAATCGGAAGACCCGCCTCCTCTTCATCCCTGGGTGCCCACCGCTGCTCATGCCCTCTGACATCACCTCCTCTCCTGAAATCATTTCCTCCTCGTTCATGTAGCCATCCTGCTCCAGGAACTCCTCGGCCTCCCCCAGGAGGGACAGGGAATCTGAACAGACAAACAAGACCTGAAAAAAAACAACTTTAGACTAGAGGTGCTAGACTAGAGGTGCTAGACGAGAGGTAATAGAGGTGCTAGGCTAGTGGTGCTAGACTAGAGGTGATAGAGGTGCTAGACTAGAAGTGATTTAGGTGCTACAATAGAGGTGCTAGACTAGTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU255332 lncRNA upstream 10450 10857553 ~ 10857877 (+) True G223421
TU255324 lncRNA upstream 20442 10847645 ~ 10847885 (+) True G223414
TU255284 lncRNA upstream 39011 10827389 ~ 10829316 (+) True G223381
TU255292 lncRNA upstream 88354 10777883 ~ 10779973 (+) False G223385
TU255358 lncRNA downstream 28412 10900596 ~ 10900908 (+) True G223441
TU255361 lncRNA downstream 30995 10903179 ~ 10903526 (+) True G223444
TU255366 lncRNA downstream 37268 10909452 ~ 10909682 (+) True G223449
TU255345 lncRNA downstream 76759 10948943 ~ 10950025 (+) True G223433
TU255728 lncRNA downstream 110596 10982780 ~ 10983332 (+) False LOC110537149
XM_036968589.1 mRNA upstream 41206 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA upstream 41206 10769638 ~ 10827121 (+) False cacng8b
XM_036968585.1 mRNA upstream 115510 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 166599 10661090 ~ 10701728 (+) False prkcg
XM_021589928.2 mRNA downstream 4612 10876796 ~ 10878635 (+) False LOC110508993
XM_036968638.1 mRNA downstream 40897 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 69597 10941781 ~ 10944125 (+) True isoc2
XM_021623014.2 mRNA downstream 73441 10945625 ~ 10947532 (+) True foxj2
XM_036968716.1 mRNA downstream 110636 10982820 ~ 10995885 (+) False LOC110537149
TU255328 other upstream 12127 10853702 ~ 10856200 (+) False G223418
TU255329 other upstream 12127 10853702 ~ 10856200 (+) True G223418
TU255285 other upstream 41048 10826515 ~ 10827279 (+) True cacng8b
TU255286 other upstream 41916 10769673 ~ 10826411 (+) False cacng8b
TU255248 other upstream 100658 10753617 ~ 10767669 (+) False LOC110520833
TU255340 other downstream 4573 10876757 ~ 10878534 (+) True LOC110508993
TU255351 other downstream 77965 10950149 ~ 10952739 (+) True G223434
TU255732 other downstream 121874 10994058 ~ 10995415 (+) True LOC110537149
TU255727 other downstream 164093 11036277 ~ 11041260 (+) True mfap5
TU255730 other downstream 169664 11041848 ~ 11043692 (+) True G223748

Expression Profile