RNA id: TU255358


Basic Information

Item Value
RNA id TU255358
length 313
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G223441
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10900596 ~ 10900908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaactcctcttcaacttcaggaggctgaagaaatttgtctttgGCCTATTAGACCCTCACAaactacagatgcaccattgagagcatgctgtcggactgtatcaccgcctggtactgcaATTGCACTGTCcacaaagctgggaccgagagactgagaaacagcttctatctccaggccatcagacagttaaataaccaccactagccggcctctgcCAAGCACCCTGCcttgaactttagtcactgttttagccggctaccacccggtactctaccttgcaccttagagactgctgccccatgtacatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255335 lncRNA upstream 28412 10868327 ~ 10872184 (+) True G223424
TU255332 lncRNA upstream 42719 10857553 ~ 10857877 (+) True G223421
TU255324 lncRNA upstream 52711 10847645 ~ 10847885 (+) True G223414
TU255284 lncRNA upstream 71280 10827389 ~ 10829316 (+) True G223381
TU255290 lncRNA upstream 120623 10778607 ~ 10779973 (+) False G223385
TU255361 lncRNA downstream 2271 10903179 ~ 10903526 (+) True G223444
TU255366 lncRNA downstream 8544 10909452 ~ 10909682 (+) True G223449
TU255345 lncRNA downstream 48035 10948943 ~ 10950025 (+) True G223433
TU255728 lncRNA downstream 81872 10982780 ~ 10983332 (+) False LOC110537149
TU255734 lncRNA downstream 88167 10989075 ~ 10989274 (+) True G223752
XM_021589928.2 mRNA upstream 21961 10876796 ~ 10878635 (+) False LOC110508993
XM_036968589.1 mRNA upstream 73475 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA upstream 73475 10769638 ~ 10827121 (+) False cacng8b
XM_036968585.1 mRNA upstream 147779 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 198868 10661090 ~ 10701728 (+) False prkcg
XM_036968638.1 mRNA downstream 12173 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 40873 10941781 ~ 10944125 (+) True isoc2
XM_021623014.2 mRNA downstream 44717 10945625 ~ 10947532 (+) True foxj2
XM_036968716.1 mRNA downstream 81912 10982820 ~ 10995885 (+) False LOC110537149
XM_036968731.1 mRNA downstream 135330 11036238 ~ 11041281 (+) False mfap5
TU255340 other upstream 22062 10876757 ~ 10878534 (+) True LOC110508993
TU255328 other upstream 44396 10853702 ~ 10856200 (+) False G223418
TU255329 other upstream 44396 10853702 ~ 10856200 (+) True G223418
TU255285 other upstream 73317 10826515 ~ 10827279 (+) True cacng8b
TU255286 other upstream 74185 10769673 ~ 10826411 (+) False cacng8b
TU255351 other downstream 49241 10950149 ~ 10952739 (+) True G223434
TU255732 other downstream 93150 10994058 ~ 10995415 (+) True LOC110537149
TU255727 other downstream 135369 11036277 ~ 11041260 (+) True mfap5
TU255730 other downstream 140940 11041848 ~ 11043692 (+) True G223748
TU255809 other downstream 266101 11167009 ~ 11174363 (+) True LOC110509074

Expression Profile