RNA id: TU255936



Basic Information


Item Value
RNA id TU255936
length 384
lncRNA type intronic
GC content 0.55
exon number 2
gene id G223898
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11038462 ~ 11039737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGAGACACCTCACTCACCAGGCAGTAGGGTAGAGACAGATACCTCACTCACCAGGCggtagggtagagacagacacctcactcaccaggcggtagggtagagacagacacctcacTCACCAGATGGtaggatagagacagacacctcacTCACCAGGTGGtaggatagagacagacacctcacTCACAGGCggtagggtagagacagacaccttACTCCCCAGGTGatagggtagagacagacatcTCACTCACCAGGCGGtaggatagagacagacacctcacTCACCAGGTGGTAGGGCAGAGACAGACCACTCACTCACCAGGcagtagggtagagacagacacctcactcaccaggtggtagggtagagacagacacc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU255919 lncRNA downstream 43313 10994675 ~ 10995433 (-) True G223886
TU255909 lncRNA downstream 55556 10982907 ~ 10983190 (-) True G223881
TU255715 lncRNA downstream 64324 10974219 ~ 10974422 (-) True G223734
TU255701 lncRNA downstream 93933 10944519 ~ 10944813 (-) True G223723
TU255689 lncRNA downstream 117756 10918689 ~ 10920990 (-) True G223717
TU255948 lncRNA upstream 22686 11061915 ~ 11065605 (-) True LOC110520907
TU255957 lncRNA upstream 39498 11078727 ~ 11079533 (-) True znf628
TU255964 lncRNA upstream 50117 11089346 ~ 11089558 (-) True G223919
TU255976 lncRNA upstream 64861 11104090 ~ 11108240 (-) True G223924
TU256005 lncRNA upstream 139226 11178455 ~ 11179883 (-) True G223950
XM_036968682.1 mRNA downstream 70231 10950133 ~ 10968515 (-) True epn1
XM_036968678.1 mRNA downstream 70250 10950133 ~ 10968496 (-) False epn1
XM_021589987.2 mRNA upstream 3738 11042967 ~ 11051742 (-) True LOC110509040
LOC110520834 mRNA upstream 12638 11051867 ~ 11054170 (-) True LOC110520834
LOC110520907 mRNA upstream 26260 11065489 ~ 11066973 (-) False LOC110520907
XM_021590011.2 mRNA upstream 29296 11068525 ~ 11079570 (-) False znf628
XM_036968745.1 mRNA upstream 40746 11079975 ~ 11085474 (-) False LOC110509048
TU254793 other downstream 1015543 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1015561 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1023854 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 1035852 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1355375 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 31717 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 132891 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 236688 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 688133 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 713622 11752851 ~ 11753680 (-) False G224869

Expression Profile


TU255936 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU255936 Expression in each Bioproject

Bar chart with 10 bars.
TU255936 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.