RNA id: TCONS_00030227


Basic Information

Item Value
RNA id TCONS_00030227
length 1871
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id XLOC_014772
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23720269 ~ 23726829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTAATCTCCAGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGTGTAATAACGTAATTGCTGCAATTGGTGAGGATGCATCATCTTTTGGGAGTAATGCAAATGTCCTTCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTAACATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGTGATCATTAAgtggtgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggtgggatgatgatgatgctccCTACCCACCTCTACAGATGGCTGAAAGTCCTTTGCAAAGTGTTGGAGAATAGGAGTTAAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGCTACATAAAAAATGCAAAGGATGAACATCAGCAACTCACCGAGATGGAACAACAATTTAAATTTGACCATCAGCAACGGTGGGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAAAGAACTGGTGTTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCAAGTCTGCATCAGTATTTTAAGACTAGCAGCTAtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTAGTTTCTGTGTAGCAAGTTTATAATACTGCTGTTGTATGATTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGATGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatgTAAAATGTATATAGTAAGTGACATGTTTCATTTTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAAAAATATACTTCATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGAATGTActggtgttaaaaaataatattaagcttTTTTGCCGTTTCAtaaaatttttaatgtttaagcagctattttttttaagtttatgcatCTGGTAGGACATTGTGATAGTTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaattttttttaatctttcaatGAGTGTTTGTGATAAAATGTTACAAGTATAACAGTACAATTATCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatgtttaataaatgtgataaATGAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030226 lncRNA downstream 92364 23625113 ~ 23627905 (-) False XLOC_014768
TCONS_00030225 lncRNA downstream 193708 23526278 ~ 23526561 (-) True XLOC_014764
TCONS_00030224 lncRNA downstream 282872 23436911 ~ 23437397 (-) True XLOC_014760
TCONS_00030223 lncRNA downstream 283782 23435958 ~ 23436487 (-) False XLOC_014760
TCONS_00030222 lncRNA downstream 308408 23410015 ~ 23411861 (-) True XLOC_014758
TCONS_00029775 lncRNA upstream 9304 23733287 ~ 23734065 (-) True XLOC_014773
TCONS_00030230 lncRNA upstream 44661 23768644 ~ 23769201 (-) True XLOC_014775
TCONS_00030231 lncRNA upstream 133129 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030232 lncRNA upstream 270051 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00029776 lncRNA upstream 417332 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00029170 mRNA downstream 10718 23708263 ~ 23709551 (-) True XLOC_014771
TCONS_00029169 mRNA downstream 45365 23672489 ~ 23674904 (-) True XLOC_014770
TCONS_00029168 mRNA downstream 58713 23660324 ~ 23661556 (-) True XLOC_014769
TCONS_00029167 mRNA downstream 92340 23625263 ~ 23627929 (-) True XLOC_014768
TCONS_00029166 mRNA downstream 125355 23592248 ~ 23594914 (-) True XLOC_014767
TCONS_00029171 mRNA upstream 21849 23745832 ~ 23747677 (-) True XLOC_014774
TCONS_00029172 mRNA upstream 43594 23767577 ~ 23768865 (-) False XLOC_014775
TCONS_00029173 mRNA upstream 70852 23794835 ~ 23797664 (-) False XLOC_014776
TCONS_00029174 mRNA upstream 72291 23796274 ~ 23799729 (-) True XLOC_014776
TCONS_00029175 mRNA upstream 146678 23870661 ~ 23871941 (-) True XLOC_014778
TCONS_00029155 other downstream 500674 23219477 ~ 23219595 (-) True XLOC_014753
TCONS_00029152 other downstream 590968 23128663 ~ 23129301 (-) True XLOC_014751
TCONS_00029151 other downstream 599342 23120398 ~ 23120927 (-) True XLOC_014750
TCONS_00029150 other downstream 605787 23114196 ~ 23114482 (-) True XLOC_014749
TCONS_00029149 other downstream 655431 23064025 ~ 23064838 (-) True XLOC_014748
TCONS_00029179 other upstream 173719 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029181 other upstream 191233 23915216 ~ 23918106 (-) True XLOC_014780
TCONS_00029186 other upstream 415797 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029188 other upstream 458792 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029189 other upstream 463611 24187594 ~ 24188743 (-) True XLOC_014788

Expression Profile

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