RNA id: TU256004


Basic Information

Item Value
RNA id TU256004
length 2565
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G223949
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11216565 ~ 11224830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaaaagttatacatttatttgcattttaatgacggaaataagtatttgacccctctacAAAACATGACtaagtacttggtggcaaaacccttgttggcaatcacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctccaggaccttaatgtgcttcttcttgaaccactcctttgttgccttggccatgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctagctgagggaaggaggttctcccccaagatttgatggtacatggcccgtccatcgtcccttttgttgcggtgaagttgtcctgtctccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcatagacagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcactttcactttcacccctctgaatcattcagatgttcataggcaaacttcagacgggcatgtatatgtgctgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgataaTTGCAActccatgaggtgagatcttgcatggagccccaggccgagggagattgacagttcttttgtgtttcttccatttacaaataatcgcaccaacttTTGTCagcttctcaccaagctgcttggcaatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatcctcggagagctctttggtcttagcctttttggagagtttggaatctgattgattgatttcttctgtggacaggtgtcttttatacaggtaacaaactgggattaggagcactccctttaagagtgtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatctttttGATTGAGAGGAGGTCAaacacttatttccctcattaaaatgcaaatcaatttataacatttttgacatgtgtttttctggattttcttgttgttattctgtctctcactgttcaaataaacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttcccctcactgtatgtAGTCTGATGAGGCAGACAGAAGCCACAAATATGGGTGAGCCATGCCAGTGTTCTAGCTGGCTCAGTGTTCAGGGAGAGACACGTCCGTGCTGTTGAGTCTCTGTAGCAGTTCAAGGTCAGGCTCCAGAGACGTAAAAGCTAGGTTAGGATAcaccaggcagagagacagataggctgGGTTAGGATAcaccaggcagagagacagataggctgGGTTAGGATAcaccaggcagagagacagataggctaGGTTAGGATAcaccaggcagagagacagataggctaGGTTAGGATACACCAGGCAGAGAGGATGTTTAGGTTCCCGTACTGCCCTCCCAAACCCACTGAACTCAGTACACATCAACCCAAATCCTATTCCCATTTTAACCCAAGTGAAGGACAATATGGGAAGTTTATTACTGAACATATTTGTTGGAATGTTTATCCTTATAAATGCTAATACTATAAAGGTTTTTACTTGTAATGCCAATCATTAAAAAGTACAGTAGTAAAATTGGTCATTGATTAACTAATGATTGGCGTCTATGAGTTAAGTCAGCTAAAAATAAATGTCATAAATTACTTGGGCATTGGTAAAAGCTAATTACAAATTATCATTAATAACTTACAGTAATAAATACTTTAGGTAGTTTAAATGAAAATGActgaaggcacacacacacatgcacacactgacacacagtaaACATAAATCCTCTTTGACACGCTCTCTCATGATGCCTGCATTATCATCCCCGACCCTATACccaacacacactatacacacacccgACACTAAGCTGCTATTTCATATGGAAGCTCCTCTCCATAACAGTGCATATCTCTAGTCCTGCACTTTAAAAGTCCAATTCAACCTCAAATGGATAAAATAATGTTATACTCCCTACATTACAGTATCTAAGCACAAGGGGCTtgtctaaccctctaaccctgttCTCTAACTGTTCCACTATCTACGGATTCACTGACGATCACTTATTTTACTTCTCTTCCGTCGGAAACTCAACCATTGGAACTTTCTCCGTCGTCGGGGAGACGGGCAGGGTGACCATACCCTCTGGGGGAGGAGATTGGGCTCCTGCAGTGCCGGCGAATCCTTTGGCAATGTCATCAAAGGTCCGCCCCTTGGTCTCCGGGACTTTGAAGTAGGTGAAGACGAAGAAGAATATGAGGAAGATCATGAAGATGATGAAGACGTAAGGACCACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256005 lncRNA downstream 36682 11178455 ~ 11179883 (-) True G223950
TU255976 lncRNA downstream 108325 11104090 ~ 11108240 (-) True G223924
TU255964 lncRNA downstream 127007 11089346 ~ 11089558 (-) True G223919
TU255957 lncRNA downstream 137032 11078727 ~ 11079533 (-) True znf628
TU255948 lncRNA downstream 150960 11061915 ~ 11065605 (-) True LOC110520907
TU256047 lncRNA upstream 51087 11275917 ~ 11278628 (-) False G223969
TU256048 lncRNA upstream 51087 11275917 ~ 11278628 (-) True G223969
TU256879 lncRNA upstream 121831 11346661 ~ 11353026 (-) True G224676
TU256882 lncRNA upstream 133342 11358172 ~ 11358416 (-) True G224679
TU256897 lncRNA upstream 166193 11391023 ~ 11392426 (-) False G224692
XM_036968754.1 mRNA downstream 51595 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 129436 11079975 ~ 11087129 (-) True LOC110509048
XM_036968745.1 mRNA downstream 131091 11079975 ~ 11085474 (-) False LOC110509048
XM_021590011.2 mRNA downstream 136995 11068525 ~ 11079570 (-) False znf628
LOC110520907 mRNA downstream 149592 11065489 ~ 11066973 (-) False LOC110520907
XM_021590085.2 mRNA upstream 134183 11359013 ~ 11363845 (-) True LOC110509113
XM_021590107.2 mRNA upstream 140593 11365423 ~ 11368231 (-) True LOC110509134
XM_036968814.1 mRNA upstream 145802 11370632 ~ 11386718 (-) True LOC110510606
XM_021590140.2 mRNA upstream 199963 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 208288 11433118 ~ 11436182 (-) False LOC110509171
TU255996 other downstream 42198 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 142815 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1193362 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1193380 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1201673 10012961 ~ 10014892 (-) True G223070
TU256045 other upstream 51087 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 502532 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 528021 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 528021 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 528021 11752851 ~ 11753680 (-) True G224869

Expression Profile