RNA id: TU256048


Basic Information

Item Value
RNA id TU256048
length 1962
lncRNA type read_through
GC content 0.44
exon number 4
gene id G223969
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11275917 ~ 11278628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAATACCTTTTTAATATAGATTGTAAAACAGTATTAGGACATAAGAGAAGTATTCTTCATCATGAAATCTGATCAACTGATAAGGTCTAGCACTAAGAAATATCTATCGCAAGAAGAAATATCGCCAAATTGAATAAGGCATATTGCTGTGATTCCCATTGACTGAGTTCCTTGTTCACTAAACTCAGTCAGACTTGATGGTAGAGATGATAAGTGGAGCTGAGTTATCACCAGGAATATTCGTGCCTGTAGAGAACAGTGGGTAGAGTCTCTCAGTAAAGGTGCAGCCAGTGAAAGAGTAGATATGAGACCTGGCATCCACATCATAAAAGAAAACCTCACCCTCCTCATAATCCACAAACACCCCCACCTTCTGGGGCTTCTTACTCAGGGAGAGGTTGACCCAATGCCCAGCGTATGCCTTGTATTCATTCATATTCCACTGCCCTACAGTCCAATATCCATCTACAGGACTTGGTGATTCATCACAATCATTCCTGTTGATGGACTCTCTAGCCACTCTCTAGCCAAACTCTCTAGCCACTCTCTAGCCAAACCCACATAGACTTCCCCTTCACCTGCACCTCATAATAGAATCTCCCTGAGGAGAACCTCTTATTCCCGAAAACACAGGCATTATTATCAAACCTCTCTGGGTTGGCTGGGAGATTCTGTTTTATGCTTCCAGATCTCACTTGTTTCCAGTCCTCAGACAGGATGAGTTTTGTATTCGCTATATGAGGGTCCAGAGTCACATTCACTGCACACTACTGTGTCCTCTTCAGATCAACATCACACaacttctccatctctttattcaGTATTTCACAGCTGAGACAGCACTCCTCATAGTCCCCACACACAGACCACTGTGGacactgatctcagaccagtacTTGGAAGGTGGAAGGGTGGTGCAGATGGATGGAGAgctctggaggaggaggagatcaTCTTAAATATCtgagagctgctccagctcagtgCTTCTCATCTGTAACTCAGTGATTTCCTGCCTCAGCTCTTCAATGATTATTTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGACTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGGCTTCTCTGCTGTTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGGCTTCTCTGCTGTTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGACCTCAGCCTGCTTCTCTGCTGCTTTAAGTTTCTTCTCTATCTCCATAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256004 lncRNA downstream 51087 11216565 ~ 11224830 (-) True G223949
TU256005 lncRNA downstream 96034 11178455 ~ 11179883 (-) True G223950
TU255976 lncRNA downstream 167677 11104090 ~ 11108240 (-) True G223924
TU255964 lncRNA downstream 186359 11089346 ~ 11089558 (-) True G223919
TU255957 lncRNA downstream 196384 11078727 ~ 11079533 (-) True znf628
TU256879 lncRNA upstream 68033 11346661 ~ 11353026 (-) True G224676
TU256882 lncRNA upstream 79544 11358172 ~ 11358416 (-) True G224679
TU256897 lncRNA upstream 112395 11391023 ~ 11392426 (-) False G224692
TU256899 lncRNA upstream 112395 11391023 ~ 11392022 (-) False G224692
TU256902 lncRNA upstream 112537 11391165 ~ 11392022 (-) True G224692
XM_036968754.1 mRNA downstream 110947 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 188788 11079975 ~ 11087129 (-) True LOC110509048
XM_036968745.1 mRNA downstream 190443 11079975 ~ 11085474 (-) False LOC110509048
XM_021590011.2 mRNA downstream 196347 11068525 ~ 11079570 (-) False znf628
LOC110520907 mRNA downstream 208944 11065489 ~ 11066973 (-) False LOC110520907
XM_021590085.2 mRNA upstream 80385 11359013 ~ 11363845 (-) True LOC110509113
XM_021590107.2 mRNA upstream 86795 11365423 ~ 11368231 (-) True LOC110509134
XM_036968814.1 mRNA upstream 92004 11370632 ~ 11386718 (-) True LOC110510606
XM_021590140.2 mRNA upstream 146165 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 154490 11433118 ~ 11436182 (-) False LOC110509171
TU255996 other downstream 101550 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 202167 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1252714 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1252732 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1261025 10012961 ~ 10014892 (-) True G223070
TU257101 other upstream 448734 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 474223 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 474223 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 474223 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 517262 11795890 ~ 11796309 (-) True G224873

Expression Profile