RNA id: TU256121


Basic Information

Item Value
RNA id TU256121
length 240
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G224033
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11388906 ~ 11389145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attaacttCAGTAAATGTAGGACAATAAAAGTAcacaacaataacgaggctatatacaaggggtaccagtaccgagtcaatgtgcaggggtacaggttagtcaagataGTTTCCACATGTAGGCTggggtaaagtgacaatgcaCAGATAATAGACagctagtagcagcagtgtaaaatcaaatggggtcaatgtaaatagtccaggtggcctttgatgaattgttcagcagtcttatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256100 lncRNA upstream 20687 11365425 ~ 11368219 (+) True G224016
TU256099 lncRNA upstream 22965 11365425 ~ 11365941 (+) False G224016
TU256105 lncRNA upstream 25249 11359022 ~ 11363657 (+) True G224017
TU256104 lncRNA upstream 28108 11359022 ~ 11360798 (+) False G224017
TU256115 lncRNA upstream 35880 11346702 ~ 11353026 (+) True G224027
TU256122 lncRNA downstream 512 11389657 ~ 11389896 (+) True G224034
TU256125 lncRNA downstream 8729 11397874 ~ 11398304 (+) True G224037
TU256143 lncRNA downstream 43082 11432227 ~ 11432808 (+) True G224051
TU256149 lncRNA downstream 58436 11447581 ~ 11447936 (+) True G224055
TU256148 lncRNA downstream 58969 11448114 ~ 11448478 (+) True G224054
XM_036963852.1 mRNA upstream 42388 11340306 ~ 11346518 (+) True LOC110520909
XM_036968802.1 mRNA upstream 50288 11324050 ~ 11338618 (+) True trpv6
XM_036968807.1 mRNA upstream 56590 11324050 ~ 11332316 (+) False trpv6
XR_005040884.1 mRNA upstream 110272 11275180 ~ 11278634 (+) False LOC118945782
LOC110509096 mRNA upstream 120366 11261193 ~ 11268540 (+) True LOC110509096
XM_021590118.2 mRNA downstream 9875 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA downstream 10700 11399845 ~ 11406578 (+) True m6pr
XM_021590127.2 mRNA downstream 22243 11411388 ~ 11420807 (+) True LOC110509154
XM_021590200.2 mRNA downstream 79629 11468774 ~ 11476776 (+) False LOC110509281
XM_021590206.2 mRNA downstream 79629 11468774 ~ 11476776 (+) False LOC110509281
TU255809 other upstream 214543 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 345214 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 347646 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 393491 10994058 ~ 10995415 (+) True LOC110537149
TU255351 other upstream 436167 10950149 ~ 10952739 (+) True G223434
TU256123 other downstream 2188 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 43975 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 191637 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 399384 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 625363 12014508 ~ 12014805 (+) True LOC110537447

Expression Profile