RNA id: TU256122


Basic Information

Item Value
RNA id TU256122
length 240
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G224034
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11389657 ~ 11389896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagtacaggaggggcctaagcacgcacccctaaggggccccggtgttgaggatcagtgtggcagatgtgttgttgcctacccttaccacctgggggtggcctgtcaggaactccaggatccagttgcagagagaggtgtttagtcccagggtacttagcttagtgatgagctttgagggccctatggtgttgaacgctgagatgtagtcatgaacagtattctcacataggtgttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256121 lncRNA upstream 512 11388906 ~ 11389145 (+) True G224033
TU256100 lncRNA upstream 21438 11365425 ~ 11368219 (+) True G224016
TU256099 lncRNA upstream 23716 11365425 ~ 11365941 (+) False G224016
TU256105 lncRNA upstream 26000 11359022 ~ 11363657 (+) True G224017
TU256104 lncRNA upstream 28859 11359022 ~ 11360798 (+) False G224017
TU256125 lncRNA downstream 7978 11397874 ~ 11398304 (+) True G224037
TU256143 lncRNA downstream 42331 11432227 ~ 11432808 (+) True G224051
TU256149 lncRNA downstream 57685 11447581 ~ 11447936 (+) True G224055
TU256148 lncRNA downstream 58218 11448114 ~ 11448478 (+) True G224054
TU256150 lncRNA downstream 59997 11449893 ~ 11450122 (+) True G224056
XM_036963852.1 mRNA upstream 43139 11340306 ~ 11346518 (+) True LOC110520909
XM_036968802.1 mRNA upstream 51039 11324050 ~ 11338618 (+) True trpv6
XM_036968807.1 mRNA upstream 57341 11324050 ~ 11332316 (+) False trpv6
XR_005040884.1 mRNA upstream 111023 11275180 ~ 11278634 (+) False LOC118945782
LOC110509096 mRNA upstream 121117 11261193 ~ 11268540 (+) True LOC110509096
XM_021590118.2 mRNA downstream 9124 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA downstream 9949 11399845 ~ 11406578 (+) True m6pr
XM_021590127.2 mRNA downstream 21492 11411388 ~ 11420807 (+) True LOC110509154
XM_021590200.2 mRNA downstream 78878 11468774 ~ 11476776 (+) False LOC110509281
XM_021590206.2 mRNA downstream 78878 11468774 ~ 11476776 (+) False LOC110509281
TU255809 other upstream 215294 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 345965 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 348397 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 394242 10994058 ~ 10995415 (+) True LOC110537149
TU255351 other upstream 436918 10950149 ~ 10952739 (+) True G223434
TU256123 other downstream 1437 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 43224 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 190886 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 398633 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 624612 12014508 ~ 12014805 (+) True LOC110537447

Expression Profile