RNA id: TU256903



Basic Information


Item Value
RNA id TU256903
length 424
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G224693
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11392614 ~ 11393104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAATTTAGATAACCAATGAAGTATATGTTTCTCTATAGATTCAAgcaactcatcattctcatgtttggtgttgtaccagTAGAAGTTGACAGTAATGagcgtaatgtcattgtaacttatcattctcatgtttggtgttgtaccagTAGAAGTTTATAGTAATGagcgtaatgtcattgtaactgatcattctcatgtttggtgttgtaccagtagaagtttacagtaatgagcgtaatgtcattgtaacttatcattctcatgtttggtgttgtacccgtagaagtttacagtaatgagtgtaatgtcattgtaactgatcacaagacaaataaagtgaccaaaggggtcacattccgagtgtagaatattaccaccaaaggtatTTTTCATTGTAGTGACACCAGCAGAGCGTTCAGATCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU256897 lncRNA downstream 188 11391023 ~ 11392426 (-) False G224692
TU256899 lncRNA downstream 592 11391023 ~ 11392022 (-) False G224692
TU256902 lncRNA downstream 592 11391165 ~ 11392022 (-) True G224692
TU256882 lncRNA downstream 34198 11358172 ~ 11358416 (-) True G224679
TU256879 lncRNA downstream 39588 11346661 ~ 11353026 (-) True G224676
TU256910 lncRNA upstream 14496 11407600 ~ 11407909 (-) True G224699
TU256915 lncRNA upstream 20603 11413707 ~ 11414069 (-) True G224702
TU256920 lncRNA upstream 28641 11421745 ~ 11423947 (-) True G224706
TU256927 lncRNA upstream 44243 11437347 ~ 11439264 (-) True G224712
TU256930 lncRNA upstream 47668 11440772 ~ 11443128 (-) True G224715
XM_036968814.1 mRNA downstream 5896 11370632 ~ 11386718 (-) True LOC110510606
XM_021590107.2 mRNA downstream 24383 11365423 ~ 11368231 (-) True LOC110509134
XM_021590085.2 mRNA downstream 28769 11359013 ~ 11363845 (-) True LOC110509113
XM_036968754.1 mRNA downstream 227644 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 305485 11079975 ~ 11087129 (-) True LOC110509048
XM_021590140.2 mRNA upstream 31689 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 40014 11433118 ~ 11436182 (-) False LOC110509171
XM_021590151.2 mRNA upstream 40014 11433118 ~ 11436222 (-) False LOC110509171
XM_036968881.1 mRNA upstream 40014 11433118 ~ 11436480 (-) False LOC110509171
XM_021590173.2 mRNA upstream 40014 11433118 ~ 11436515 (-) False LOC110509171
TU256045 other downstream 113986 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 218247 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 318864 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1369411 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 334258 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 359747 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 359747 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 359747 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 402786 11795890 ~ 11796309 (-) True G224873

Expression Profile