RNA id: TU256920


Basic Information

Item Value
RNA id TU256920
length 2203
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G224706
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11421745 ~ 11423947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGGGTGTCGTCATCGGATGAGGAATAATCGGACCAAAgctcagcgtggtaagtgttcatgttttttatttaaactgaacactataacaaaataacaaagagaataaacgaaactgaaacagtcctgtcaggtgcagaaaacactaaacagaaaataactacccacaaaacataggtgggaaaaagctacctaagtatggttcccaatcagagacaacaatagtcagctgtccctgatggagaaccatacccggccaaaacaaagaaatacaaaacatagaaaaaggaacatagaatgcccacccaaatcacaccctgaccaaaccaaaatagagacataaaaagctctaaggtcagggcgtgacagtatggcATGCCATTGCAAAATGGACTTACAGctttccttcttcaagatcccttttaccctgtacaaatctcccactttaccaccaccaaagcacccccagaccatcacattgcctccaccatgtgcttgacagatggcgtcaagcactcctccagcatatttacattttttctgcgtctcacgaatgttcttctttatGATCCAAACtcctcaaacttagattcgtctgtcacttattccaatcttcctctgtccagtattcttttgcccatcttaatcttttatttttattggccagtctgagatatggctttttctttgcaactctgcctagaaggccagcatcccagaatcgcctcttcactgttgatgttgagactggtgttttgcaggtactatttaatgaagctgccagttgaggactagacactctaatgtacttgtccccttgctcagttgtgcaccggggcctcccactcctttttctattctggtttgcgccgagtttgcgctgttctgtgaagggagtagtatacagcgttgtacgagatcttcagtttcttgccaatttctcacatggaatagccttaatttctcagaacaagaatagactgatgagtttcagaagaaagttatttgtttctggccattttgagcctgtaatcgaaccaacaaatgctaatgctccagatacccaactagtctaaagaaggccagttttattgcttcttaaatAAGTACAACAGTTTtctgctgtgctaacataattgcaaaagagttttctaataatcaattagccttttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgataataggcctctgtacgcctatgtagatattccattaaaaatctgttgtttccagctacaatagtaatttacaacattaacaatgtctaaactgtatttatgatcaatttgatgttattttaatggacaaaaaacaaggacatttctaagtgaccccaaacgtttgaacggtagtgtatatactgtatatcagggatgggcaactccagtcctcaggggcttGATTGGTGCCACACTTGTGTTCTAGCCCCAGCTAAcatacctgactccaataatcaactaatcatgatttTCAGTTTAGAATACATTTAGTTTAATCACCTgcgtttgctagggatggagaaaagtgACACCACTCCGGCTCCCGAGGACTTGAGTTGCCCATCACTGCTGTTTATGAAGGTTCACAAATCTCGTCTTCAAAACGATTGTGTAATAGCAGTAATAATATATGACTAGAAATCATTATTTTTGTTGTGATTTGAGGGACTGAAAGAACACATGGGTGGAGACACCAGGCTTCATAAGAGATTTATAAGGTGTTTATAAGTTGTTTTGTGACACTTCATTTATCAttttaagtccaaaaatgtatgtagcaactaaTGATTCTAGCTTTAAATATGTCTGTCTCGTAGGTAGGACCAGAGTTTAATTCTCCTGCGGAAAAACTCAGGACCCTGGTTGCGCCTCAAGTTTGTTCTGGTCAGGTCATGTGATTATGAAACCTCCCGGAAGAGGAAGCGAAATCTGTCACTCCTTTTTTCTGATTCATAAACAGTTAATGAAATTAAGCAGACCAGACCCAACTGCTAAATCCATGGAGACCGGAACTgtagaaatgtttgttttatggTAAATTACCTAAGTGGGATATTTGGTACAAGCTATATGGAAGGTCAGATTTCAGTGGTTGATGTTCTACTGTAAATGAGTACAAACTGAACTGACATTATTTGCACACTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256915 lncRNA downstream 7676 11413707 ~ 11414069 (-) True G224702
TU256910 lncRNA downstream 13836 11407600 ~ 11407909 (-) True G224699
TU256903 lncRNA downstream 28641 11392614 ~ 11393104 (-) True G224693
TU256897 lncRNA downstream 29319 11391023 ~ 11392426 (-) False G224692
TU256927 lncRNA upstream 13400 11437347 ~ 11439264 (-) True G224712
TU256930 lncRNA upstream 16825 11440772 ~ 11443128 (-) True G224715
TU256932 lncRNA upstream 21066 11445013 ~ 11445590 (-) True G224717
TU256935 lncRNA upstream 23674 11447621 ~ 11447947 (-) True G224720
TU256933 lncRNA upstream 24913 11448860 ~ 11449099 (-) True G224718
XM_036968814.1 mRNA downstream 35027 11370632 ~ 11386718 (-) True LOC110510606
XM_021590107.2 mRNA downstream 53514 11365423 ~ 11368231 (-) True LOC110509134
XM_021590085.2 mRNA downstream 57900 11359013 ~ 11363845 (-) True LOC110509113
XM_036968754.1 mRNA downstream 256775 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 334616 11079975 ~ 11087129 (-) True LOC110509048
XM_021590140.2 mRNA upstream 846 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 9171 11433118 ~ 11436182 (-) False LOC110509171
XM_021590151.2 mRNA upstream 9171 11433118 ~ 11436222 (-) False LOC110509171
XM_036968881.1 mRNA upstream 9171 11433118 ~ 11436480 (-) False LOC110509171
XM_021590173.2 mRNA upstream 9171 11433118 ~ 11436515 (-) False LOC110509171
TU256045 other downstream 143117 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 247378 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 347995 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1398542 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 303415 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 328904 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 328904 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 328904 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 371943 11795890 ~ 11796309 (-) True G224873

Expression Profile