RNA id: TCONS_00030230


Basic Information

Item Value
RNA id TCONS_00030230
length 558
lncRNA type sense_over
GC content 0.37
exon number 1
gene id XLOC_014775
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23767577 ~ 23769201 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCACAAGAAGAGTTCTGAAGGTAAATCAAGTGATTTCAAGTGAAGGCTTTTTGAGAATGTGTGGCCTTCTCTCATGATCCTCTTCAGTATGAAGTAGAGTACATTACATTAAgttctgtaaatatataaatatattttttaaaagcactcTAAAAGTTTCAATCACTGTTTGCTGTATTTTGAAGTGTCCACCATATCAGTATTGTGCAGGTTCATTTTCACgatttattgaattattgaatatagTCATATGTCTATTCCACCTCAAACATTACACACGTGTCTGTCAGTGCTTGACATTTCACATCAGCTGCAAATATTCATCTTTTAACAGGTGACATTCTGGACCAGTATGAACTCGGCAAGGAGATTGGAGAGGGAGGATTTGGCAGCGTCTATGAAGGGAAGCGCTTGGAGGATGGCCTtgaggtgaacaatccctttaacatATATTATGTTCACTTTTTAGTGCACTTGATGTGATTATAACAGAAGTGTTGTTTTGTTGAGCAGGTGGCAGTAAAAATTGCCAGAAAGCCATCGAACATGAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029775 lncRNA downstream 34579 23733287 ~ 23734065 (-) True XLOC_014773
TCONS_00030228 lncRNA downstream 41815 23720269 ~ 23726829 (-) False XLOC_014772
TCONS_00030229 lncRNA downstream 44654 23722868 ~ 23723990 (-) True XLOC_014772
TCONS_00030227 lncRNA downstream 44661 23720269 ~ 23723983 (-) False XLOC_014772
TCONS_00030226 lncRNA downstream 140739 23625113 ~ 23627905 (-) False XLOC_014768
TCONS_00030231 lncRNA upstream 87911 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030232 lncRNA upstream 224833 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00029776 lncRNA upstream 372114 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030233 lncRNA upstream 445072 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00030234 lncRNA upstream 618864 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00029171 mRNA downstream 20967 23745832 ~ 23747677 (-) True XLOC_014774
TCONS_00029170 mRNA downstream 59093 23708263 ~ 23709551 (-) True XLOC_014771
TCONS_00029169 mRNA downstream 93740 23672489 ~ 23674904 (-) True XLOC_014770
TCONS_00029168 mRNA downstream 107088 23660324 ~ 23661556 (-) True XLOC_014769
TCONS_00029167 mRNA downstream 140715 23625263 ~ 23627929 (-) True XLOC_014768
TCONS_00029173 mRNA upstream 25634 23794835 ~ 23797664 (-) False XLOC_014776
TCONS_00029174 mRNA upstream 27073 23796274 ~ 23799729 (-) True XLOC_014776
TCONS_00029175 mRNA upstream 101460 23870661 ~ 23871941 (-) True XLOC_014778
TCONS_00029176 mRNA upstream 106181 23875382 ~ 23895839 (-) False XLOC_014779
TCONS_00029177 mRNA upstream 107332 23876533 ~ 23892243 (-) True XLOC_014779
TCONS_00029155 other downstream 549049 23219477 ~ 23219595 (-) True XLOC_014753
TCONS_00029152 other downstream 639343 23128663 ~ 23129301 (-) True XLOC_014751
TCONS_00029151 other downstream 647717 23120398 ~ 23120927 (-) True XLOC_014750
TCONS_00029150 other downstream 654162 23114196 ~ 23114482 (-) True XLOC_014749
TCONS_00029149 other downstream 703806 23064025 ~ 23064838 (-) True XLOC_014748
TCONS_00029179 other upstream 128501 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029181 other upstream 146015 23915216 ~ 23918106 (-) True XLOC_014780
TCONS_00029186 other upstream 370579 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029188 other upstream 413574 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029189 other upstream 418393 24187594 ~ 24188743 (-) True XLOC_014788