RNA id: TU256249



Basic Information


Item Value
RNA id TU256249
length 426
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G224138
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11618687 ~ 11619112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggattgaggagggagaacagaattcatcctatttctttagacttgagaaatttcactctaaaaataacactatccataagttaaacattgatggtgttattacagatgaccAAAAATTAATCGCTAAATACTGCAGCAatttttacagaaaattgtatagctctacgaactgtcaggaatccacagatatgtttttttaactcactgaataatgttcactctatcagtgatatagaatctaaacagtgtgatgaacccatcaaagttgaagagattatagagtctatcaaacatctaaagaacaataaatcaccaggtgttgatggaattacatcagaattttacaaattattttctgaacaagaacccttcctatttgaagtctttttagagagtattaaaaacaatgttctccctcctacaacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU256226 lncRNA upstream 2712 11613566 ~ 11615975 (+) True G224116
TU256245 lncRNA upstream 42229 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 56706 11561759 ~ 11561981 (+) True G224126
TU256214 lncRNA upstream 66097 11552284 ~ 11552590 (+) True G224105
TU256208 lncRNA upstream 77201 11540868 ~ 11541486 (+) True G224099
TU256274 lncRNA downstream 74711 11693823 ~ 11694023 (+) True G224163
TU256276 lncRNA downstream 77382 11696494 ~ 11696725 (+) True G224165
TU256278 lncRNA downstream 81940 11701052 ~ 11701355 (+) True G224167
TU256291 lncRNA downstream 132602 11751714 ~ 11751899 (+) True G224177
TU256297 lncRNA downstream 142836 11761948 ~ 11765453 (+) True G224182
XM_021590250.2 mRNA upstream 5623 11610579 ~ 11613064 (+) True LOC110509324
XM_036968982.1 mRNA upstream 9722 11602384 ~ 11608965 (+) False kel
XM_021590271.2 mRNA downstream 4853 11623965 ~ 11630699 (+) False LOC110509359
XM_021590266.2 mRNA downstream 4857 11623969 ~ 11630699 (+) False LOC110509359
XM_036969015.1 mRNA downstream 4919 11624031 ~ 11630699 (+) True LOC110509359
XM_021590277.2 mRNA downstream 11731 11630843 ~ 11635397 (+) True LOC110509378
XM_036968998.1 mRNA downstream 16565 11635677 ~ 11654262 (+) False ncapd2
TU256224 other upstream 28343 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 182227 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 226725 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 444324 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 574995 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 169417 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 395396 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 401853 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 640209 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 734714 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile