RNA id: TU257034


Basic Information

Item Value
RNA id TU257034
length 913
lncRNA type read_through
GC content 0.56
exon number 3
gene id G224800
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11646510 ~ 11659065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCTTCTTCTCTTGTCTCCGATGCTGTGGGTCACTGTGTGCTCTCACAGGCTGGTTgcatctctttctctcagtctTTCCCTCTCTATCAGCTACCTCTCACTGTTTGGCACCTGCTGAAAGCATCACTATCTCACGCTTTgcccctccttttctcctcttccctctctctcactgatgTTATTGAAGGGATGAGTTATCCTCTTGTGTTCGCTTGGCAGAGGTTTAATGTTAGTGTATCAGCTGGGATGATGCCGTCGGTTTATACCGGCAAATATCCTCCCTCCggccccctccatctcccctcccctaCTTCATCACTGGGATGATGTCATGGCAGTAGGAGTGTTTGTCATCACCAAGGTGACTAGAGGTTGCCGGTGGCCACACATCTCCCCTGCTCGGAACACAATGATGTCACGGGAGGACACCCGCCAGGGTCAAAGGGCAAACAGAACATGACAAGAGCGCCCAACGGGTACAGTGGCTGGGGAGGACCAATTTTTGTAGCTGGACCTACAGTGGAGGTCGTCCTCCATCGGTCTGGTAACCCCACCACCCCATCAGTAGCTCAGTGCTGACGCTGCGCTCCAGGTGGGACACCTGCCAGAACGCCACGCAGCCACACAGAGACAGCAGCTGGGCCAGGGACACGCAGCTCACCGCAGGGACTAGAGGGACAGGAACACCGTACTGATCACGAAGTACCAATACAAAGGTCCTGAGATGCACCCGGCAACTGGCTGACATCCTTGTTTGCTAACATCTCCCCGCCCTCCGCAATCTGGTCCAATAGCAGACGAGAGCAGCGCTGGAGGAGGCGGGAGCAGAGCTGGTCTGGGGACTCGGACAGGAAGTACAGCAGACGGACAGCCTGCTCCATGAAGCTCTGCCAATGAGGGTCCGCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257056 lncRNA downstream 28216 11617251 ~ 11618294 (-) True G224821
TU257057 lncRNA downstream 29505 11616452 ~ 11617005 (-) True G224822
TU257022 lncRNA downstream 57542 11580307 ~ 11588968 (-) True G224795
TU257015 lncRNA downstream 70985 11575163 ~ 11575525 (-) True G224788
TU257010 lncRNA downstream 76750 11569535 ~ 11569760 (-) True G224783
TU257028 lncRNA upstream 9784 11668849 ~ 11693327 (-) False G224797
TU257031 lncRNA upstream 9784 11668849 ~ 11693327 (-) True G224797
TU257087 lncRNA upstream 34415 11693480 ~ 11693715 (-) True G224848
TU257089 lncRNA upstream 36550 11695615 ~ 11695860 (-) True G224850
TU257091 lncRNA upstream 42830 11701895 ~ 11702705 (-) True G224852
XM_021590257.2 mRNA downstream 31672 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 97769 11503867 ~ 11548741 (-) False fam131bb
XM_021590547.2 mRNA upstream 68219 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 68219 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 68219 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 68219 11727284 ~ 11738056 (-) False LOC110509576
XM_021590439.2 mRNA upstream 116990 11776055 ~ 11779268 (-) True LOC110509520
TU256045 other downstream 367882 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 472143 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 572760 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1623307 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 68297 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 93786 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 93786 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 93786 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 136825 11795890 ~ 11796309 (-) True G224873

Expression Profile