RNA id: TU256274


Basic Information

Item Value
RNA id TU256274
length 201
lncRNA type intronic
GC content 0.33
exon number 1
gene id G224163
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11693823 ~ 11694023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaaaataaaaatttgatCAACAATATGATCCAAGGCACTTGTGAGATTAAGTAGGCAGGGTTGTCAATGTATAatctgtgtatgtactgtatgtttgtgtgttgtaCTTTGGATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256249 lncRNA upstream 74711 11618687 ~ 11619112 (+) True G224138
TU256226 lncRNA upstream 77848 11613566 ~ 11615975 (+) True G224116
TU256245 lncRNA upstream 117365 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 131842 11561759 ~ 11561981 (+) True G224126
TU256214 lncRNA upstream 141233 11552284 ~ 11552590 (+) True G224105
TU256276 lncRNA downstream 2471 11696494 ~ 11696725 (+) True G224165
TU256278 lncRNA downstream 7029 11701052 ~ 11701355 (+) True G224167
TU256291 lncRNA downstream 57691 11751714 ~ 11751899 (+) True G224177
TU256297 lncRNA downstream 67925 11761948 ~ 11765453 (+) True G224182
TU256298 lncRNA downstream 82727 11776750 ~ 11777501 (+) True G224183
LOC110509388 mRNA upstream 11067 11680241 ~ 11682756 (+) True LOC110509388
NM_001124209.1 mRNA upstream 20677 11668497 ~ 11673146 (+) True gapdh
XM_036969034.1 mRNA upstream 32710 11658813 ~ 11661113 (+) True wu:fj39g12
XM_036968998.1 mRNA upstream 39561 11635677 ~ 11654262 (+) False ncapd2
XM_036968999.1 mRNA upstream 39561 11635677 ~ 11654262 (+) True ncapd2
XM_021590506.2 mRNA downstream 14826 11708849 ~ 11727254 (+) True LOC110509555
XM_036969058.1 mRNA downstream 43927 11737950 ~ 11746566 (+) False LOC110509537
XM_021590458.2 mRNA downstream 44027 11738050 ~ 11747921 (+) False LOC110509537
XM_036969055.1 mRNA downstream 44442 11738465 ~ 11746566 (+) True LOC110509537
XM_036969103.1 mRNA downstream 60113 11754136 ~ 11776033 (+) False LOC118936286
TU256224 other upstream 103479 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 257363 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 301861 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 519460 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 650131 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 94506 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 320485 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 326942 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 565298 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 659803 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile