RNA id: TU256276


Basic Information

Item Value
RNA id TU256276
length 232
lncRNA type intronic
GC content 0.49
exon number 1
gene id G224165
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11696494 ~ 11696725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgaagaggcgatgttgcgccttcttcaccacactgtctgtgtgcgtggaccatttcagtttgtcggtaacatgtacaccgaggaacttaaaactttccaccttctccactgctgtcctgtcgatgtggatagggtcggtgctccctttgctgtttcctgaagtccacaatcatctccttcgttttgttgacgttgagtgagaggttattttcctggcatcacactccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256274 lncRNA upstream 2471 11693823 ~ 11694023 (+) True G224163
TU256249 lncRNA upstream 77382 11618687 ~ 11619112 (+) True G224138
TU256226 lncRNA upstream 80519 11613566 ~ 11615975 (+) True G224116
TU256245 lncRNA upstream 120036 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 134513 11561759 ~ 11561981 (+) True G224126
TU256278 lncRNA downstream 4327 11701052 ~ 11701355 (+) True G224167
TU256291 lncRNA downstream 54989 11751714 ~ 11751899 (+) True G224177
TU256297 lncRNA downstream 65223 11761948 ~ 11765453 (+) True G224182
TU256298 lncRNA downstream 80025 11776750 ~ 11777501 (+) True G224183
TU256300 lncRNA downstream 81064 11777789 ~ 11778204 (+) True G224184
LOC110509388 mRNA upstream 13738 11680241 ~ 11682756 (+) True LOC110509388
NM_001124209.1 mRNA upstream 23348 11668497 ~ 11673146 (+) True gapdh
XM_036969034.1 mRNA upstream 35381 11658813 ~ 11661113 (+) True wu:fj39g12
XR_005051432.1 mRNA upstream 52734 11643456 ~ 11643760 (+) True LOC118964382
XR_005051431.1 mRNA upstream 56163 11640038 ~ 11640331 (+) True LOC118964381
XM_021590506.2 mRNA downstream 12124 11708849 ~ 11727254 (+) True LOC110509555
XM_036969058.1 mRNA downstream 41225 11737950 ~ 11746566 (+) False LOC110509537
XM_021590458.2 mRNA downstream 41325 11738050 ~ 11747921 (+) False LOC110509537
XM_036969055.1 mRNA downstream 41740 11738465 ~ 11746566 (+) True LOC110509537
XM_036969103.1 mRNA downstream 57411 11754136 ~ 11776033 (+) False LOC118936286
TU256224 other upstream 106150 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 260034 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 304532 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 522131 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 652802 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 91804 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 317783 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 324240 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 562596 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 657101 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile