RNA id: TU256425


Basic Information

Item Value
RNA id TU256425
length 301
lncRNA type intronic
GC content 0.39
exon number 1
gene id G224294
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12016467 ~ 12016767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGtataatcaaagacaacaacacctgtcacagaagatgttttgtagataggcctacagtatatcaacgACAACAACACCTGTCACAGAATATGTTTTGTAGACAGGCCTACAGtataatcaaagacaacaacacccatcacagaagatgttttgtagacaggcctacagtataatcaaagacaacaccaccatcacagaagatgttttgtagacaggcctacagtataatcaaagacaacaacaccatcacagaagatgttttgtagacaggcctacagtatatcaaagacaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256366 lncRNA upstream 31354 11927476 ~ 11985113 (+) True LOC110509582
TU256365 lncRNA upstream 31538 11927476 ~ 11984929 (+) False LOC110509582
TU256397 lncRNA upstream 56572 11959292 ~ 11959895 (+) True G224267
TU256350 lncRNA upstream 106913 11909031 ~ 11909554 (+) True G224225
TU256308 lncRNA upstream 180297 11785487 ~ 11836170 (+) True G224189
TU256426 lncRNA downstream 140 12016907 ~ 12017156 (+) True G224295
TU256427 lncRNA downstream 3183 12019950 ~ 12020685 (+) True G224296
TU256447 lncRNA downstream 53449 12070216 ~ 12078021 (+) True G224308
TU256448 lncRNA downstream 68011 12084778 ~ 12088970 (+) True G224309
TU256442 lncRNA downstream 82695 12099462 ~ 12103188 (+) False G224307
XM_036969197.1 mRNA upstream 11744 11987253 ~ 12004723 (+) True LOC110509600
XM_021590558.2 mRNA upstream 31354 11980307 ~ 11985113 (+) False LOC110509582
XM_021590568.2 mRNA upstream 32317 11980344 ~ 11984150 (+) False LOC110509582
XM_021590471.2 mRNA upstream 50339 11957772 ~ 11966128 (+) True LOC110509543
XM_036963089.1 mRNA upstream 157500 11837883 ~ 11858967 (+) False tnfr
XR_005040957.1 mRNA downstream 73134 12089901 ~ 12106492 (+) False LOC110509740
XR_005040958.1 mRNA downstream 73134 12089901 ~ 12106492 (+) False LOC110509740
XR_005040960.1 mRNA downstream 73134 12089901 ~ 12106492 (+) False LOC110509740
XR_005040962.1 mRNA downstream 73134 12089901 ~ 12106492 (+) False LOC110509740
XM_036969285.1 mRNA downstream 73134 12089901 ~ 12108140 (+) False LOC110509740
TU256420 other upstream 1662 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 225828 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 426123 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 580007 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 624505 11391333 ~ 11391962 (+) True G224035
TU256429 other downstream 4198 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 242554 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 337059 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 352224 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 643853 12660620 ~ 12661167 (+) True grik5

Expression Profile