RNA id: TU256447


Basic Information

Item Value
RNA id TU256447
length 1210
lncRNA type read_through
GC content 0.49
exon number 2
gene id G224308
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12070216 ~ 12078021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTATTCTGTAGTACTTAATGGATGTCTGGGAATGTACAATATCTGGGTTGGTTGAAAGAAGCAGCTCTCATTTCAGGTGGTATATTTAGATCCCATTGAACATAGCATAACTGTATCATACCAATTCTCTATACATGTAAATAcacattaaaatgtatttttccccCTTGGTGGATTTTGGCATTAGGCTCAGAGGTAAGTATGACATTTGGTGTACGGAAGATCTTAAACATTAAACAGAACATTAAACAGAAGGGAACAAACATTCTGAAAACTAGTCTGTTTGCAACATCAGGGCAGATATATTGTGACATATTACTCTCAAGACCAATGCAAGGTTTATATAcagacataacagtggatctcaCCATGTCCTCTGTGTCATCCTATAACTAATGGGCAGGGACTCCTGTTACTCAGAAACCCACTAACTGCTCTCTGTTAGAACATGATATTAATCAGAGAGCAGTGTCCCGAGGAGGGCTAAGTCCTGATTCTCCTATCACATCTCTGTCTGCTGTCCGATTCGCTCCCCCCACACAGGGCACAGTCATTTGTTCTCCTTCCTGTAAACCCTCTTCACGTGGCTCTGTATGGTCTGAATCCATTGTGGCATTGGCCACATTCATGGCACCTATATGTTTGTGAGCTGTCTGATGCTTCTTCAACATACTTGATGTGGTAAAGCATTTTCTACACACAGGACACAtgtatggcttctcccctgtgtgagtcCTCATGTGCACTATCAGAGATGTATTCTGGCTGAAACATTTGCCACAATCTTGGCATTGAtgtggtttctcccctgtgtggctCCTCATATGTAAGTTTAGGTGTCCACGCTGAGTAAATCCTTTGCCACAATCTTGACAGTGAAacggcttctcccctgtatgactCCTCAAATGCCTTTTCAGGAAAGTATCCCAAGCAAAATATTTACCACAAATATGACAACACTTTGCTCCAATGTGAGTTTGTAGGTGATCCATCATACTTTCTGTGGACTGACAGAATTTTCCACACACACCACAAAGATGTTCTTTATCCTGTGTGTGCGCTTGTACATGATTTAATAAAGACGCCATGGAGTCAAATTGCTTTCCACATACCTTACAACTAGGAGCAGCATCCCAGCTTACACTGGGTCTCGAGTGTGATTTTAGATGGTTCAATTTCCTGTCCTTAACACTATGAGAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256427 lncRNA upstream 49531 12019950 ~ 12020685 (+) True G224296
TU256426 lncRNA upstream 53060 12016907 ~ 12017156 (+) True G224295
TU256425 lncRNA upstream 53449 12016467 ~ 12016767 (+) True G224294
TU256366 lncRNA upstream 85103 11927476 ~ 11985113 (+) True LOC110509582
TU256365 lncRNA upstream 85287 11927476 ~ 11984929 (+) False LOC110509582
TU256448 lncRNA downstream 6757 12084778 ~ 12088970 (+) True G224309
TU256442 lncRNA downstream 21441 12099462 ~ 12103188 (+) False G224307
TU256439 lncRNA downstream 26091 12104112 ~ 12108376 (+) False G224307
TU256446 lncRNA downstream 26091 12104112 ~ 12108376 (+) True G224307
TU256456 lncRNA downstream 31760 12109781 ~ 12110023 (+) True G224317
XM_036969205.1 mRNA upstream 16566 12005269 ~ 12053650 (+) False LOC110537447
XM_036969203.1 mRNA upstream 16566 12005689 ~ 12053650 (+) False LOC110537447
XM_036969208.1 mRNA upstream 17507 12005688 ~ 12052709 (+) False LOC110537447
XM_036969197.1 mRNA upstream 65493 11987253 ~ 12004723 (+) True LOC110509600
XM_021590558.2 mRNA upstream 85103 11980307 ~ 11985113 (+) False LOC110509582
XR_005040957.1 mRNA downstream 11880 12089901 ~ 12106492 (+) False LOC110509740
XR_005040958.1 mRNA downstream 11880 12089901 ~ 12106492 (+) False LOC110509740
XR_005040960.1 mRNA downstream 11880 12089901 ~ 12106492 (+) False LOC110509740
XR_005040962.1 mRNA downstream 11880 12089901 ~ 12106492 (+) False LOC110509740
XM_036969285.1 mRNA downstream 11880 12089901 ~ 12108140 (+) False LOC110509740
TU256429 other upstream 47772 12020965 ~ 12022444 (+) True G224297
TU256420 other upstream 55411 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 279577 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 479872 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 633756 11433120 ~ 11436460 (+) True G224052
TU256552 other downstream 181300 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 275805 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 290970 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 582599 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 888011 12966032 ~ 12966533 (+) True G225451

Expression Profile