RNA id: TU256446


Basic Information

Item Value
RNA id TU256446
length 3939
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G224307
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12099462 ~ 12108376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCCGTGAAAGTAGTCACAAACAAAGTTTGCCAATCTATTTACATCTCTGGTGGGGTAGTGTGGGACTGGGAAGGTTTGGATTTTTTGTTGCAGCAAAGTCGGAAGGATGCTGGTTCTGCTGGGCGCTTGGTGAATAATGGCAGTAGAGGAGGATGAGACAGAGGTCTGCTTGCCTTTGCTCAGTACAGTATGTATCTCCTGACCCTTCTCACTGTGCTGTTGCTACATGACCGCTAATTATCCTGTTGCTGAAACAGGACAAAAACATGTCACTGAAAGGTTGCTATCCCAAGGGCTGTTTACAGTGTTAGAGTGACCTAACAAAATCCTACAACCCTCACAACAAGTAGCATTTTATTTATGCCTGTTTTGTGCCACCTATAACTCATTATTACTGTAAGTACAGTGTAACAAGCTTTGTAATTGCTCAGAGAAATGGATTACATAGTTATAGCTCTAGCTTTCAGCGTGTAGAGGTTTTGTGTAGATTACAGTGCCTGGCTGAAATCTCCTGGGTGAATAATGATGGGGGTGGACTATTAGAACTGTACagagtggtgtggtggtgttctTCCCTGATGAATATGCTTGTTATCCATCCTCTGATTTCAGTACTACAACAACAGCTTTTGGTAGTGGGTGTTGTGAAAAATAGATCTGTTTAGTCATACAGTAAATCCTGAGTGATGCTCTTCTGGACCCGAACAGGTCATATTTGTTCCCACTGTCAGGTTAGTGATGGTAGACGGACGGCCTGATTGGTATTACATTCACCTCTGTCTTCAGTTCTGCCTCACCTGTATCACTCTTAAAGACAGACTTTTGTTATCAACTGTAGTTAATAACACAGCAGTGTCCTACACCAAATCAAGCTTTATGTGTCACATgtaccaaatacaacaagtgtagactttaccatgaaatgcttacttacaaaaccgtaaccaacagtgcagttcaagaagagttaagaaaatataatACCAGTAAGTATTTCTATGTGGTATCCTACTAAAATCACTAGTTTAATGTCAGATACAGTCCTGTTGAATGTAGTATGCTCCCCTTAAATATTCTTTACTTTGGCACTTGTCTATCAACCCTCACATAGCCTGTTCTTGACAAATGTTCAGATAATATTCTGTGATTACGGCTTTATTTGAAAAGTTTTCTTATCATTTTCTTTTgtgtttttgtctctctcttccttttgtTCTGACTCTGATCCCACCCTCCTTCTCATATTTGATTTTCACTCTCACGTGTACATGATATATCTCACCCCGCTCAATCTCCTGCTTCTACCATTTCCCTCTGTCCCTTTTTGAATATGTCTGACCTCTTTGCACCCTAAAAATCAcctctcctgtccctcctctacatctacccctcctcttctctcctcccctataccttcccctccaccactctccctccctcttctacccattcctcccctctctctctcctttcctgccTTCACTcttcccctacctccctccatctcctcaccCTCCCCCTCCTTGCAGACATTCGTCTGCGTGTGCGAGCAGAATACTGGGAGCATGAGTCGGCTCTGCGCGGCGGCGTCTCCTCGGACAAGCAGCAGCCCCTGGAGCGGCAGTTTGAGCTGTTCAGTCGTGCCACCTCCGTGCTGCGCGCCCGCGACCTGGGCTCCATCATCTGCGACATCAAGTTCTCTGAGCTGGACAACCTGGAGGCCTTCTGGGGGGACTATCTGAGTGGAGCGCTGCTAGAGGCCCTGAAGGGGGTGTTCATCACAGACTCTCTGCGGAGGGCGGCGGGGAGAGAGGGGGTCCGGCTGCTGATCAGTGTGGACCAGGATGACTACGAGGAGGGTCGCAGACTGCTGCTGGATGCACAGGAACAACAGGCCGGCTGCTGGGGACGAGACAGGCATCAGAGCCATATACACTACCTGGTCTCACGTTGTCATACTCCCTAGACCCAACCTGAGAAAGCTGGTTATGGACGTTCggctctgacagacagacaggcagctgtGCGAGGTCATGAGCCCAAGGATAGAGGAATGAAAAGGAGAATAAAATATGAagaggaacattttttattttttctctccTTTTTAAGTTTCTCATGCTGAGAATAGAGGATACAGCCACTCCTAGGTCAGGGGAATGAATAGTCCCCAGGGAAAACAGCCAAACTTGAAGTGAAGGCAAACTGGACTAAAAGACTTGACACACTGTTCTGTTTGGAATTGATAACACAAGTTGCACTGAGCCTAGATGCCCTCACGGCACTGAGGAAGAGACTgcctctgagacacacacacacacacacacacacacagagaaactaAACTTCCGCTGTAACACACACAAACTACCACTGTATCTAACATACACGCTCTGTAAAATCATCTACACGATGAACCATCAGCGCTGCCTGTAAGACTCATTAAAGCCAAGAGACATTTCTTGCTAACAGTGACAGCCACCAACTAGACTCTGCGCTAATGCTGAGCATCTCTGGTTATGTTTGAGGAGCGTGTGAGATGCCCTGCAAGGCGAACTTCACCCGCCTAAATATTAGTTTGCGTTTCCATTGAAATGTATGATTTTGAAAAGATGAGCGAGACTGCAGCTctcagacacagagggagagatgatGGGGAAATTACTAAAGATTATGTTTTGACCTTTTGGGAGAGAATTTGAAATAGATGGCGAAGTGAAGACTACCTGAGGACAGTGTAGTGGACAAATCGCTGGTCCTTCGAGAactcgtccacacacacacatcatgatcACAAGCCACTGGTAGTCCAATCACTGCCATGCTAACCCAGGGCCTGATAGCTGTGGTCAGTGGCCATCTCATCTCAGATGATTGGAGTGATTACCTCTCATCCTCAGCCAACCATGGAGAACTCATCACCACAAGTTGTTGAACAGCAGCTGGGATAACACACTGGGCTGTGCTCACCCCGGCTTCCAGCAAGGCAAGGCCACTGCCTTTCCCATTGGAACTGAAGCACAAGACAGTGCTTCAGTCAATAAAACTGATGTGGAGGAGATCAAAATCAGAAGGATACATCCTAGTTCCACTCAGCCCTGACTTGTAGGCCCCACTAGTGGCTCACAGAGCGCTGTCTGTCTCTAGTCTAGTCACCCTGGTGGAACTAATGCCTGAACTCCTCTGAGTGGGATCAATAACCCCCTCTGtcactccaccaccaccatgggaggAGAAGGAGTAAGGGGGAAAAGGGGAGAGGtaggagaaggggaaagagaggaagagggagaaggatCCCCACTTCCATCCCGCCTTTCAGCTCCTGGACAGCCGCCTCATCCTCTGGAGGATAAGTACCCTGATACAACCAGGCTGCCTGGTCTGCTACAGCACTGTGTCTGGTTCACACAGCCCTATGGGACCAGAGATGGAGGACTAGGGAGGCACTCAGGAAAACCTTAGTAGTGTTTTGCTTTTTCCGTGTTTTGGTATATGGATTCGTTAGTGTAGCTTTGTATTGTCCATaagagaaaatataaaaaatactgtGTGTTCTAGTTCATTAATTTAGGGTGAACTTTTGTTTAAGTATCTGGATATTTTTATTTAGGCACTGCAAAAGTGCTGTATATTAGTTTAATATATTAGTGGAAAGTTGGAattatttcaaataaaataaatgatttatcAAAAGTTTATTGCGTCTATGATGTACCCATGCCTTCAGaacatattcacaccccttgactttttccatattttgttgttacaacctgaattttacatgtattaaattgagatgtgtcactggcctacacacaataccccataatgtcaaagtgggataatgtttttacaaatgtattaaaaattaaaagcggAAATGTCTTGTCCATAAGTAATCAACCCCTTTTATTATGGCAGAGTTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256442 lncRNA upstream 924 12099462 ~ 12103188 (+) False G224307
TU256448 lncRNA upstream 15142 12084778 ~ 12088970 (+) True G224309
TU256447 lncRNA upstream 26091 12070216 ~ 12078021 (+) True G224308
TU256427 lncRNA upstream 83427 12019950 ~ 12020685 (+) True G224296
TU256426 lncRNA upstream 86956 12016907 ~ 12017156 (+) True G224295
TU256456 lncRNA downstream 1405 12109781 ~ 12110023 (+) True G224317
TU256467 lncRNA downstream 14260 12122636 ~ 12123053 (+) True G224328
TU256495 lncRNA downstream 64642 12173018 ~ 12173579 (+) True G224351
TU256515 lncRNA downstream 109576 12217952 ~ 12223546 (+) False G224366
TU256522 lncRNA downstream 109576 12217952 ~ 12223546 (+) True G224366
XR_002471480.2 mRNA upstream 966 12096927 ~ 12103146 (+) True LOC110509764
XM_036969205.1 mRNA upstream 50462 12005269 ~ 12053650 (+) False LOC110537447
XM_036969203.1 mRNA upstream 50462 12005689 ~ 12053650 (+) False LOC110537447
XM_036969208.1 mRNA upstream 51403 12005688 ~ 12052709 (+) False LOC110537447
XM_036969197.1 mRNA upstream 99389 11987253 ~ 12004723 (+) True LOC110509600
XM_036969230.1 mRNA downstream 45838 12154214 ~ 12241744 (+) False LOC110537505
XM_036969220.1 mRNA downstream 45839 12154215 ~ 12241744 (+) False LOC110537505
XM_036969225.1 mRNA downstream 45839 12154215 ~ 12241744 (+) False LOC110537505
XM_036969234.1 mRNA downstream 45839 12154215 ~ 12241744 (+) False LOC110537505
XM_036969249.1 mRNA downstream 45840 12154216 ~ 12238917 (+) False LOC110537505
TU256429 other upstream 81668 12020965 ~ 12022444 (+) True G224297
TU256420 other upstream 89307 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 313473 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 513768 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 667652 11433120 ~ 11436460 (+) True G224052
TU256552 other downstream 150945 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 245450 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 260615 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 552244 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 857656 12966032 ~ 12966533 (+) True G225451

Expression Profile