RNA id: TU256467


Basic Information

Item Value
RNA id TU256467
length 418
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G224328
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12122636 ~ 12123053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCAGAAATTCCAGAGGTCATTTTCAGAATGTTCATATTATTGTGGTTTTAGGAAAGTCATAGGAACAAAGTAGGCCTCTCTAAAATGACgacctaaccctaaaccagaGAACGTTAGGATTTCCCTATCATGCTTTTATAACAGGCTGTATTTCCTAATGCAGACATGTAAAATACCCATGTATCAGTGAATATGGAACGATATTGCGTTTTAAAAAGCCCTCCTTTTCCCTGGAACACTAAATGTTCCACATAGCATGTCTTCAAATGCTTAGGCAATGTGATTCAATTCCCTGATTCCAACCACAGTAGGGATGTTCTGAGTTTCAGTGTTTTTATGCCTATATCtggaacatttaaaaaacatgaaACAAGGCTTTAACGATGTTATTTCTGTCAGGTGAAATATATATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256456 lncRNA upstream 12613 12109781 ~ 12110023 (+) True G224317
TU256439 lncRNA upstream 14260 12104112 ~ 12108376 (+) False G224307
TU256446 lncRNA upstream 14260 12104112 ~ 12108376 (+) True G224307
TU256442 lncRNA upstream 19448 12099462 ~ 12103188 (+) False G224307
TU256448 lncRNA upstream 33666 12084778 ~ 12088970 (+) True G224309
TU256495 lncRNA downstream 49965 12173018 ~ 12173579 (+) True G224351
TU256515 lncRNA downstream 94899 12217952 ~ 12223546 (+) False G224366
TU256522 lncRNA downstream 94899 12217952 ~ 12223546 (+) True G224366
TU256536 lncRNA downstream 130885 12253938 ~ 12254451 (+) True G224377
TU256572 lncRNA downstream 167241 12290294 ~ 12296245 (+) True G224405
XM_036969285.1 mRNA upstream 14496 12089901 ~ 12108140 (+) False LOC110509740
XM_036969291.1 mRNA upstream 14496 12089901 ~ 12108140 (+) False LOC110509740
XR_005040958.1 mRNA upstream 16144 12089901 ~ 12106492 (+) False LOC110509740
XM_036969230.1 mRNA downstream 31161 12154214 ~ 12241744 (+) False LOC110537505
XM_036969220.1 mRNA downstream 31162 12154215 ~ 12241744 (+) False LOC110537505
XM_036969225.1 mRNA downstream 31162 12154215 ~ 12241744 (+) False LOC110537505
XM_036969234.1 mRNA downstream 31162 12154215 ~ 12241744 (+) False LOC110537505
XM_036969249.1 mRNA downstream 31163 12154216 ~ 12238917 (+) False LOC110537505
TU256429 other upstream 100192 12020965 ~ 12022444 (+) True G224297
TU256420 other upstream 107831 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 331997 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 532292 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 686176 11433120 ~ 11436460 (+) True G224052
TU256552 other downstream 136268 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 230773 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 245938 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 537567 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 842979 12966032 ~ 12966533 (+) True G225451

Expression Profile