RNA id: TU256597


Basic Information

Item Value
RNA id TU256597
length 381
lncRNA type intronic
GC content 0.41
exon number 2
gene id G224425
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12348661 ~ 12349516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaggaaggagagggaatcaGATCcagtgtgatggagggagggggagagagggagggagagatgggaaggaaggagagagaatcaGATCCAGTGtgatggaggtagggggagagagaatcaGATCCAGTGTgatgtagggggagagagaatcaGATCcagtgtgatggagggagagagagaatcagatccagtgtgatagagagagagaatcagatccagtgtgatggaggtagggggagagagagaatcagatccagtgtgatgtagggagagagagaatcagatccagtgtgatagagagagagaatcagatccAGTCtgatggaggtagggggagagagagaatcagatccAGTGTgatggaggaagggggagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256577 lncRNA upstream 37337 12307188 ~ 12311324 (+) True G224409
TU256572 lncRNA upstream 52416 12290294 ~ 12296245 (+) True G224405
TU256536 lncRNA upstream 94210 12253938 ~ 12254451 (+) True G224377
TU256515 lncRNA upstream 125115 12217952 ~ 12223546 (+) False G224366
TU256598 lncRNA downstream 87 12349603 ~ 12351053 (+) True G224426
TU256551 lncRNA downstream 148067 12497583 ~ 12521347 (+) False grik5
TU256561 lncRNA downstream 172470 12521986 ~ 12522519 (+) True G224395
TU256560 lncRNA downstream 193933 12543449 ~ 12546273 (+) True G224394
TU256556 lncRNA downstream 197005 12546521 ~ 12548469 (+) True G224390
XR_005040969.1 mRNA upstream 100748 12243040 ~ 12247913 (+) True LOC118945814
XM_036969215.1 mRNA upstream 106917 12154216 ~ 12241744 (+) False LOC110537505
XM_036969319.1 mRNA downstream 19325 12368841 ~ 12430981 (+) False LOC110503596
XM_036969326.1 mRNA downstream 19325 12368841 ~ 12430981 (+) False LOC110503596
XM_036969338.1 mRNA downstream 90430 12439946 ~ 12460864 (+) True LOC110509831
XM_036969377.1 mRNA downstream 113556 12463072 ~ 12488166 (+) False LOC110509786
XM_036969362.1 mRNA downstream 113773 12463289 ~ 12488166 (+) False LOC110509786
TU256552 other upstream 22586 12259321 ~ 12326075 (+) False LOC110509826
TU256429 other upstream 326217 12020965 ~ 12022444 (+) True G224297
TU256420 other upstream 333856 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 558022 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 758317 11580782 ~ 11590344 (+) True LOC110520911
TU256553 other downstream 4310 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 19475 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 311104 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 616516 12966032 ~ 12966533 (+) True G225451
TU257850 other downstream 626657 12976173 ~ 12976779 (+) True LOC110509972

Expression Profile