RNA id: TCONS_00029183


Basic Information

Item Value
RNA id TCONS_00029183
length 4912
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_014783
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24126775 ~ 24136233 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCTGCACGTTCTGGTGTAACGTCACAGTAATACACGGCTCTAATTGGCTGCTGCAGAAAGGCGGGTCTAATCTTCAGCGCCTAGGAAGAACAAGACGGCCATCTTCGTGAGGTCGCAGGCCTTTGTGATGCCCAGACACTGCTCTGCTGTAGGTTGCAAGTCACGGGACACAAAAGACGTTCGAAAATCCGGAATCACATTTCACAGGTTGCCAAAAAAGGGAAACCCTCGCCGCACCACCTGGATTATCAACTCTCGTCGCAAAGGGCCTGAGGGAAAAGGACAGTGGGACCCCCAGAGTGGATTCATCTATTTCTGCTCTAAACACTTCACCCCTGATAGCTTTGAACTCTCTGGAGTCAGTGGCTATCACAGATTGAAGGATGATGCGATTCCCACTGTGTTTGAAATTGAGCCTCACAAGAAAGGCACTGCTGGGAAACGAAGAGGCAGACCTCGAAATGTGGACAAATGTACCAGCATTAAGAACTCCACCAAAGATGAAGCTTTTGAAAGCCCAGAGATCTTCACCAATGCAACTGTAGCAGACACAGACAATGAGTGTGAAAAAGGGGAGGACCACCAAAGTCAGCCTCCTCCCCAGCCTTCATCTGACGCTCCTCAAAACTCTGATGAAACGACATTAGAGGATCAAACACCTGACCCCCCTTCTCCTCCACCTTCTCCTCGTCCACCTTCTCCATCCTGCTACATGAAGCGTCTCCCTCCACCTCCTGGCTTTTACTTGCCGAAAGAGCACAGCTACGCTCAGCTGTGCCCTCTAGTGTGGCGCAAGCGTTATGACAAAGCCATTGACAGCTTGGAAAAAGCACTGCGTCTTCTGAGTGCAGCCCGACGGAGGGAGAACCGCCTGCGTAATGCACTGCTGCGCCTCAGAGAGAACCGACTAAAGAGCACTCTACTGCGTGCACGAGATGGGGCGAAAGGGAAGGAGGTCAAAGGAGGAAGGTTTTCAAGTTGGGCTTCTCAAAAAGGACAGGGGGTGAAGGTGGACAGAGGTTGCAATCTTGAGGGATTGGAGGAAGGCACAAATGAAGGCACAACTGATGAAATCGATCTTATAGCTGAGGGATGGAACGGACAGACACAGACAAAAGGAAAAGTCacagcagaagaagaagaaggctGCTGCTTTTATTGCGGACGAGACAATGAAGGAAACAAAGTAAGTGGGTATAAGGAGGCACCTGTAGGACCTGAGGAAGTTCAAGGATCCCAGGTGAAACAGAAACCTAAGAGAATCCAAGAAGTCAAAACCAAAGCCAAAGTGATCAAAGAGCAAAAGCCAGAGATCTCCAGGACTGATGTTTCCCCTGTGGAGCAACAAAGCTACTACTTGTATTACTGTGAAAATGCAGAGAACGAGGACGCGATGCAGGTGGTAACGATGGAATTGCAACCACACCAACTGAGCACCGAAGACGAAGCATCTCTCGAGCTCAACAGCACTGCAGAAGCGATCCAGCAAGTCGCTCTACTGCATCCAAACACTGACCTGCACACTGCTCCGGGACCTGTTCAGTACTCGGCAACGCTACAGGAAACTTCAGCGCCATTCCAGCTGCAGCAAATCCAACTGCTTCAGCCACATCAAGGACTTTTTCTCCCTGACCTCGCCGCAAAGGAAAACAGCGAAATGGAAGTCGAGCAGCAGCATTTATACTGGGTTCAGGACAGGAGTGATGAGCATGTCCTACTGATGCAGGTTCCTGAAAGAACCGAAAGGAACCAAGTAGATGTTGAGACTGTGATTGAGACTTTGCAGCCTCAGGCAATTTTGGAGAGATTTCAGACAAAGAGCACTGAAGAAAGGGATGTACTGACAGTCAAGTGTGATTCCACTGCATTGACGTCTGCGGGGTGGGAAAATGGTCATCTCTCACACCAATCAGACCTAAGGGCCACAGCAGTTGGGGTCGATGTCAGAGAAAGACTGAAGGAACATTTAGAGGGGTTTCAGCTTCAGCTTAGCAGTGAATTTATAGATTGAATGACTCGACAGGACACGTTTCTGCTGTTGTATCAcaatcaaatgtgtttttttttttattctccacTCAAAGAACATTTACAGCATTTTAagttgaaatgtttgaaaaacatGTTTAGCATTCTATTCATATGCAGGCAGGAGGATATCATTTACTAGTCATTTTAATTGAAAAgtcataatttaataaaactctTCGTTATTAAAATTTgcatgtttagtttacaatgaaGAAGGACAGTAAAAAGTGATGTGAAATCTATGTTTGGTAACCCCTACTTGGAATTTGTCCTCTGCGTTTAAGTCACTGGGGTACATTTGTCCACATTAGGACAGTGtttctcaggccccgtttacactatttcgttttagttttaaaaagcataaatcgCCTCTCATCCACACTAGAGTTTTCAAGCACCGAAAACagagctttttgaaaatgctgaagaggctgttttcattttaaaatgctgctgctctgttTCAGTGCATGTCagagcgtatgtgtgtgtgtgatcatgtgatgtgcgttttcagtggtatagtgtggatggagagttGCTCAGAAACTCttggtgaaacgctagtgtggacgctgatagttttcattataaaacgccgttttaaaactaaaacgtatttgTGTAAACGGGGTCTCAGTTCTGACCTAAGCACCCCACTGTGCTGCACATTTTTAAGCTTCTCTTTTCATGTCAGACGTTTGTTCAAACAACAAGTGCCCTGCAATTGACTCCAGATGATATTCTGCCATGATTTAAGTTTAAAGAGAGCAGATATGGTTCATTCAAATGCTATGTAAACTCATATTTATTTGTGAACATATATTATTTCACACATCTTTTGGAAGACTCTGTGCTCAGGGATTCTACCGGTTTCAGcaagtcaaatttaaaactttataagacctttttaagaccataaaTAACTTTTAGACTTGTATTTCATGGCTTAACGCTAAGGATATTTTAAATGGCCCAGCAGAATTTTTTTACTTGCCCCATCAAAAAACGAATtctagctatttcttagccacatattcaaaataatgtgtcaaaacaatcagaccctagttgtatacatactaacttaaaaaaactctttaaaaataaaagtaaactaaatgtatgcacaacaaacTGTTATAGTATTAATTATAAATAgagttttttttagatgtattGTTGGCGATTGGATATATGTTGAAtcaattgggtagctttacataaacaaaggaaaattaggacctgtttaaaatgatttaaggcctttcattcattcattttctttttggctttccagcatattttttacgctccagatggccttccagctgcaacgcatcaCTTGGAAATGATtcaagacctacaagacaatattccTGTGAATTCTGcaaaagacttttaaagacccagattattagtttttgaaatttaagactttttaagaccccatggaAACCCTGAGTGCTGTTTGGTAAATATGTGAACAAATGTTTCAAAATGTAATAAAGGTTTCTTGTGCTCTGGTAAAGTAGAAGGGACTAGTGCTCTATGCACACTGCCTAGCGATGTGTCAATCAGAACATAGTGTATACTAGGAGCACTTCTAATGAGCTGGTTATCTAAATCAGCTGGGTTGAATAACAGAGACCTGCAAAATATGAAGATCAATTGGGCGTGAGGACCAGGATTGAGAAACGCTGCATTAGAAGCAATGAATACACAAATGTCTCATTTCCCCTGAGTGGTACAGTTCAGTGCATTTATGTCTCTTTCCACTGTCAGAGGTAACAAAATAAGAATAATTTTTGTTAGGGTACTTAGCACTACAATATGGTACTAAAAGAGTGGAGCTAAAATCTCTGCCGAGTGctgattggtttacagagaatcatcTCTAGCTTGTGCAACAAAAGTACATAAgggaaataaaatatagtaagtGGAACTTTTAAATGCACTATAAAAATACTATGACAGCGCAAAGCAGTGAACCATGGTCGACTCGAGCTCAAACATGCCATATGCCAAGAAGAAAGAACAGAATATACTGTATCTCTTTTTGTTGTCTAAACGGTACTTCAATAGATGGAAATGCCAGGATTACTCCTTTAAGACCTAAAATAACTGAATTGATTTTAGAAACcacttttaaatcatttaaacccTGTATAGTATTGCTGTTTTTCCATTTGTCAATCCAAACCATTTCACCCccccaggttttttttttatatattaagtttttagttatgatactcctaaaatcatttcacataaatctgcagatatttaactaaatttttcacagaaatagcaaaaaatgtcagcagattctgtctgactctaataataactaaaacagacattgattaaatattttttagcaAGGATGCAGGGATGAATTGATTAAAAGTGACAGTACTGTTACAAAAGAttactatattaaattaaaataataatctattaCTTATAAAAAGTAATGGTGAGACAATGAGAGTGCTTAAGAGACCTGTTAAAAGAGtatatttgttgattttattgAACTCAACCAATATAACAAATGAAAAGCATTCAGTTTTAAGAAGGGTTCCTTATGGTGCGATATAAGCagctatataattttattaacattaatatggTTTTCTTATATTTAACCCTTAGTTGTTGCTTGCACATAATATGACCATGCAGCTTAACTGTTTTCCATATAGGTAGTAAGtactttaaatgttaaatatattattatacattttagtcATCTGTGCTATAACATGGttcattaattaaaacaattgtctaatatttgtattatattactattaaagtgggattttattatttttttttcaaataaagaaagGTTTTcaatttca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040914-84 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human THAP7 (THAP domain containing 7).

Ensembl:

ensembl_id ENSDART00000104087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030232 lncRNA downstream 63548 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 269183 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030230 lncRNA downstream 357574 23768644 ~ 23769201 (-) True XLOC_014775
TCONS_00029775 lncRNA downstream 392710 23733287 ~ 23734065 (-) True XLOC_014773
TCONS_00030229 lncRNA downstream 402785 23722868 ~ 23723990 (-) True XLOC_014772
TCONS_00029776 lncRNA upstream 5491 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030233 lncRNA upstream 78449 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00030234 lncRNA upstream 252241 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00029777 lncRNA upstream 550886 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030236 lncRNA upstream 616707 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029182 mRNA downstream 1318 24123409 ~ 24125457 (-) True XLOC_014782
TCONS_00029178 mRNA downstream 208639 23897666 ~ 23918136 (-) False XLOC_014780
TCONS_00029180 mRNA downstream 212032 23898287 ~ 23914743 (-) False XLOC_014780
TCONS_00029176 mRNA downstream 230936 23875382 ~ 23895839 (-) False XLOC_014779
TCONS_00029187 mRNA upstream 25888 24161712 ~ 24163845 (-) True XLOC_014786
TCONS_00029190 mRNA upstream 60264 24196088 ~ 24198139 (-) False XLOC_014789
TCONS_00029191 mRNA upstream 60264 24196088 ~ 24198184 (-) True XLOC_014789
TCONS_00029192 mRNA upstream 78401 24214225 ~ 24218942 (-) False XLOC_014790
TCONS_00029193 mRNA upstream 86044 24221868 ~ 24224142 (-) False XLOC_014791
TCONS_00029179 other downstream 208641 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029181 other downstream 208669 23915216 ~ 23918106 (-) True XLOC_014780
TCONS_00029155 other downstream 907180 23219477 ~ 23219595 (-) True XLOC_014753
TCONS_00029152 other downstream 997474 23128663 ~ 23129301 (-) True XLOC_014751
TCONS_00029151 other downstream 1005848 23120398 ~ 23120927 (-) True XLOC_014750
TCONS_00029186 other upstream 3956 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029188 other upstream 46951 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029189 other upstream 51770 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029209 other upstream 621019 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 621369 24757193 ~ 24757324 (-) True XLOC_014799

Expression Profile

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