RNA id: TCONS_00029776


Basic Information

Item Value
RNA id TCONS_00029776
length 277
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_014785
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24141315 ~ 24145677 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctatatacatataaaaataagaagagtatacattttgatttcattgcAACTTTAATGTTGAAAGTGGGAAATAAAATGACAGCATGATAGTTGGTGTGCTCAATGAAACCATCTGGAGGCTTTAGTatgaatttaaaaacattttgaaatgaaaTCATGGAGACAAAAAGGTCAATATTTATAGATCTGTCAGGAGGAGTTTAACAAACtgtggttactaTGGTGCATATACGGCATACAGGACTGTGTAGAAGTTTTCTCCAAGATGCTTCTAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030232 lncRNA downstream 78088 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 283723 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030230 lncRNA downstream 372114 23768644 ~ 23769201 (-) True XLOC_014775
TCONS_00029775 lncRNA downstream 407250 23733287 ~ 23734065 (-) True XLOC_014773
TCONS_00030228 lncRNA downstream 414486 23720269 ~ 23726829 (-) False XLOC_014772
TCONS_00030233 lncRNA upstream 68596 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00030234 lncRNA upstream 242388 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00029777 lncRNA upstream 541033 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030236 lncRNA upstream 606854 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA upstream 606854 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029185 mRNA downstream 5082 24129466 ~ 24136233 (-) True XLOC_014783
TCONS_00029184 mRNA downstream 5491 24126775 ~ 24135824 (-) False XLOC_014783
TCONS_00029183 mRNA downstream 5491 24126775 ~ 24135824 (-) False XLOC_014783
TCONS_00029182 mRNA downstream 15858 24123409 ~ 24125457 (-) True XLOC_014782
TCONS_00029178 mRNA downstream 223179 23897666 ~ 23918136 (-) False XLOC_014780
TCONS_00029187 mRNA upstream 16035 24161712 ~ 24163845 (-) True XLOC_014786
TCONS_00029190 mRNA upstream 50411 24196088 ~ 24198139 (-) False XLOC_014789
TCONS_00029191 mRNA upstream 50411 24196088 ~ 24198184 (-) True XLOC_014789
TCONS_00029192 mRNA upstream 68548 24214225 ~ 24218942 (-) False XLOC_014790
TCONS_00029193 mRNA upstream 76191 24221868 ~ 24224142 (-) False XLOC_014791
TCONS_00029186 other downstream 1421 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 223181 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029181 other downstream 223209 23915216 ~ 23918106 (-) True XLOC_014780
TCONS_00029155 other downstream 921720 23219477 ~ 23219595 (-) True XLOC_014753
TCONS_00029152 other downstream 1012014 23128663 ~ 23129301 (-) True XLOC_014751
TCONS_00029188 other upstream 37098 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029189 other upstream 41917 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029209 other upstream 611166 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 611516 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029214 other upstream 911135 25056812 ~ 25060877 (-) True XLOC_014804