RNA id: TU258745


Basic Information

Item Value
RNA id TU258745
length 3772
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G226200
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13218202 ~ 13221973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactgtagttggggttacagtggcagtacattggtcatgtgttTGTATTGTAGAGGGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagagggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTACGGTcgtactgtagttggggttacagtggcagtacattggtcatgtggttgtactgtagaggGGGTTATGGTGATACTACGGTCAAGCAGCGTTGGAACCTTACTCACAGTGCATGTCTATGATCTCGTCCAGGCTGGGGAAGATGGTGGCCAGCTCTGTGGCGGTCATGAGTTCCTCTCTCTCCAAAGGCTTCCAGAACACTGTCTGCAGAACACTCAGCATACGCACGTGGGCGTGCTCCGTCGCAAAcaactctgagagagagagagagagagagagagagacagagacagagaaagacagagacagagagagagattcctcTAGTGCCAATTCATTCTCAATATTTTGCATCAGATGAGTAGCAGCTCAATGTTACACCGCAATTACTTCTAATTGGATCCCTCCATCCCCCGTCCCTCCTCACCGTTGATGACCTCCTGCCGCTTGGTCTCCTTCTTGCTGAGGTCTTTGAGGGTGTCTGGGGGGGTGTGTTCTCTCCAGTTGGGCGGGTCCTGCTCCAGCTCCAGGAGGCGAGGGTCCTGTTCCTCCTGCTGGGGGGTGGTGCCAGAGAGGGAAAGACCTGGGAGCACACCCTCGGGCAGTAACACCCCTTCATCAACACtgatagaagagaggaggacagaggaggaggagaggggcaggTATAAGGGTATGGGGATTAAGGGTATGGGCGATAATATGAAAAGAGTCTAACGCGAAGCTAGAAAAACCTGCTTGGGTTGAGAGGCATTTGGATTGGGACATTACGCTATTGGCTGGTTCAAAGTCTACATAATCCACACACAGCACTAACATTACACGTAGTTACAGTTGGTACTGTAGCCCTGACTAAGAAAATAACTCCAGCTCTGACCCTCCTCCTCCAGTCAAGCTGTGTCACTCAGCATGGATCTCTTCCTGACTTAATGAAGCTGCTGGGGACACAGTGGAAGAAGCTTCCATTCACTCTCACTCAGCCTTTCTGTCTTAGACATCAGACAGTCAGTAAAGCAAAGTTAGTTGGGCAGTAATATCAGCCTGTCCATCAGttactatagtcagtcagtctgcctgTCCATCAGttactatagtcagtcagtcagtcagcctgtcCATCAGttactatagtcagtcagtcagcctgtcCATCAGttactatagtcagtcagtctgcctgTCCATCAGTTACTGTGAGGAGCTgtgctcctctctcccccctttgagagaaggggggggggtagGGGTCTGCCTTACGAGGGGTGGGGAGAGGTCGGGGAGGAGTGTGCTGCCGTGGCGGCGGCTTGCAGGTCCACGTCGCTACGGGAACGCGACTGTTTGGCCCGGGAGGAGCCACGGCGACGGGAGGAATGTCTGTCCACACGAGCACTCTCACTGCGTCCCACACGcctggggagggggggaggggagggaggaggagagtacatcgagggaagggagagaggagagcgagaggagagccaGTGGGTGGGAAAAATACAAGGAGGATGGTAGTAGGGGAGGCACGGGaggaagtagagagacagacggagtgaGGAGTACAGGAACCACAAGAAAATGGTCCAAAAGACCAAACCAAAAAGTACAGAGTGGAACAACAAAGACAGGGGAGATATTAGGATAAAGTGGATCCAAGCAGGAGAACCATTACAGAGGAAGTCAATGTGATGTCAAAGGAATGTAGAGGATCAAAAGAAAAGCACACAAGAGATGTGACAGAGAATGGATGGTTAGACTCAGGAGCATAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGTTAGCATAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCAGAGACACTCCACACAGTCCTGGGTTACTGCTTAATGACTAGCCCTATTAGAAACACATTGGAAGCCCATCTACCTCAAGACTATTAGTTAAGAAAGCGGTCCTTAGTAACAtctcagtgtgtctgtgtaccaAGGCCTTTCAATTATGCAGTGTTAAATGGTAATCAATTGGGCTTATCAGCTTtccaatctcacacacacacacacacgaagactATTACTCTCTAACATCACAGCCTACTCACGTCACTTCAAGCTACAGGATAAACAATACTTAGCCATGCagtgagagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagtaATGCAGGATGGACTGTGTGTTATCAATATGAGGCCCAGTGCGTGTCCGTATCCCTGTCGCAGAGAAGTAGAAACCCACCTTGTCTTGCGTCTGTAAAAACACGGGACAGGACAGTTACATAACCACCACAACCATtcaacagtaacacagtaacccCTTTCTACAAACCTCCAACTCTCCCCATCAACCGCTGCAGCACACGGACAGAGCCTAGCAGCACTGAACGCACTGTAAAACCACAGAAAGCAAAGCACGCCCACAAACACAAGACGTCTGCTGTCCTGAACATGGTACCACATGAAGCCCTGTGAAGACTGGACAACAGAACATAGCGGAACCCTATAGAACCACACATACTGATGCCTTCTGCAAGCAACAGACATGAAAGCGAACCAGACCTCACTGCTTGACCTACAGTAGGACTGGGATAAAGCCGACAACAGACAAATCTAAAgctggaccacacgactgaagCACAATAAAAGCCAACTTAATGAACTTAAGCCTGTAGAGATACAATGCTCTACAAACCAAATATAGCACAATGAATGCCCAAATCAGACAGACGCACAACCCCAGACAACATAACGTTATACCAGCTTTCCCCAGCTCTGGTACTTGAGTCTAgcctgcagacacacagacaagatGACACACTACAGTACAATGTTAACTATTATACACTTAACTTGCTCTGAACAACTGAGCAGAGTCAGCATCGCACAAACAAGGAGACAGCAGTGGTGCTTTGGAAGAGGAGCAAACAAACATGAAAaatggacacacagagagaaagaacgtGGAGAACAGGTAAACAAAACAAAAGATTTGTggtagaggagaagggaggaggaggggttggggGCTGGAGGGGAAGACCAGGTCCCTGTAGCCCCAGTAAGGGTCCATCTCCAAATGCTGGGTGGGTGTTCACTACATGGAGCTGCTCTGGCAGGGCAGGGTTAAGGTGTGGTAGGTAGGCTAGGCAGCACAGTACACAGCAGGGACGGACGGAGACACTGAGGGAGTTTTACCACGCTTCCTCAGCCTTAGCATAGCCACTGACCCCTAaccttttaaaaatgtttgaCTATGTTCAACTCTACCTAAAGGTGTTGGGTCTATGTTGGTCTTTGGTTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258746 lncRNA downstream 339 13217657 ~ 13217863 (-) True G226201
TU258767 lncRNA downstream 1052 13216875 ~ 13217150 (-) True G226222
TU258766 lncRNA downstream 1446 13215875 ~ 13216756 (-) True G226221
TU258759 lncRNA downstream 10388 13206072 ~ 13207814 (-) True G226214
TU258760 lncRNA downstream 13070 13203344 ~ 13205132 (-) True G226215
TU258768 lncRNA upstream 1301 13223274 ~ 13223678 (-) True G226223
TU258770 lncRNA upstream 3069 13225042 ~ 13225341 (-) True G226225
TU258771 lncRNA upstream 4388 13226361 ~ 13226571 (-) True G226226
TU258776 lncRNA upstream 24580 13246553 ~ 13246890 (-) True G226231
TU258777 lncRNA upstream 25111 13247084 ~ 13247459 (-) True G226232
XM_021581457.2 mRNA downstream 289138 12925454 ~ 12929064 (-) False cxcr3.1
NM_001124423.1 mRNA downstream 289201 12925622 ~ 12929001 (-) True cxcr3.1
LOC110503616 mRNA downstream 335186 12880885 ~ 12883016 (-) True LOC110503616
XM_021591169.2 mRNA downstream 342514 12864942 ~ 12875688 (-) True tlr21
XM_021591157.2 mRNA downstream 357613 12856694 ~ 12860589 (-) True LOC110509927
XM_021591500.2 mRNA upstream 117220 13339193 ~ 13341845 (-) False LOC110510146
XM_021591509.2 mRNA upstream 117812 13339785 ~ 13341845 (-) True LOC110510146
XM_036969665.1 mRNA upstream 124136 13346109 ~ 13347872 (-) True LOC110510138
LOC110503661 mRNA upstream 137909 13359882 ~ 13360962 (-) True LOC110503661
XM_021591465.2 mRNA upstream 154882 13376855 ~ 13378759 (-) True LOC110510120
TU258728 other downstream 37930 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 150845 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 745142 12472299 ~ 12473060 (-) True G225171
TU257449 other downstream 760411 12454388 ~ 12457791 (-) True G225127
TU257419 other downstream 877236 12336241 ~ 12340966 (-) True G225099
TU258769 other upstream 1911 13223884 ~ 13224515 (-) True G226224
TU258842 other upstream 122101 13344074 ~ 13344375 (-) True G226294
TU259125 other upstream 704701 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 777763 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 1206820 14428793 ~ 14475166 (-) True G227060

Expression Profile