RNA id: TU258920


Basic Information

Item Value
RNA id TU258920
length 812
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G226355
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13493442 ~ 13494253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaggttagttaacacagtgtccaaggaggggccagaagtatacagaatggtgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagcaacatcattgatgtatacagaaaagagagtcggcctgagaattgaaccctgtggcacacccatagagactgtcagaggtccagacaacaggccctccgatttgacacactgaactctatcagagaagtagttggtaaaccaggcgaggcaatcatttgagaaaccaaggctgtcgagtgtgccaataagaatgttgtgattgacagagtcgaaagccttggccaggtcgatgaatacggctgcacagtaatgtctcttatcgatggcggttatgatgtcgtttagaaccttgatcgtggctgaggtgcacccatgaccagctctgaaaccagattgcatagcggagaaggtatggtgggattcgaaatggtcagtaatctgtttgttaactaggctttcgaagaccttagaaagacagggtaggatagatataggtctgtagtttgggtctagagtgtcaccccctttgaagagggggatgaccgcggcagctttccaatctttgggaatctcagacgatacgaaagagaggttgaacaggctagtaataggggttgcaacaatttcggcagataattttagaaagagagggtccagattgtctagcccggctgatttgtaggggtccagattttgcagctctttcagaacatcggctatctggatttgggtaaaggagaaatggtgggggctttggcgggttgctgtggagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258940 lncRNA downstream 349 13492685 ~ 13493093 (-) True G226375
TU258939 lncRNA downstream 1030 13492151 ~ 13492412 (-) True G226374
TU258937 lncRNA downstream 5136 13488054 ~ 13488306 (-) True G226372
TU258936 lncRNA downstream 5725 13487006 ~ 13487717 (-) True G226371
TU258934 lncRNA downstream 20298 13472923 ~ 13473144 (-) True LOC110505114
TU258905 lncRNA upstream 23471 13517724 ~ 13587278 (-) True G226340
TU258903 lncRNA upstream 35378 13529631 ~ 13532702 (-) True G226338
TU258954 lncRNA upstream 46218 13540471 ~ 13541320 (-) False G226389
TU258955 lncRNA upstream 46218 13540471 ~ 13541320 (-) False G226389
TU258956 lncRNA upstream 46218 13540471 ~ 13541320 (-) False G226389
XM_021591565.2 mRNA downstream 11501 13480119 ~ 13481941 (-) True LOC110510190
XR_002470685.2 mRNA downstream 18945 13463634 ~ 13474497 (-) False LOC110505114
XR_005041143.1 mRNA downstream 19742 13463634 ~ 13473700 (-) False LOC110505114
XM_021591554.2 mRNA downstream 34394 13440784 ~ 13459048 (-) True LOC110510175
XM_021591547.2 mRNA downstream 34541 13440784 ~ 13458901 (-) False LOC110510175
XM_036975403.1 mRNA upstream 64240 13558493 ~ 13678674 (-) False LOC110510231
XM_036975402.1 mRNA upstream 64240 13558493 ~ 13678675 (-) True LOC110510231
NM_001160511.2 mRNA upstream 223991 13718244 ~ 13723892 (-) True rs19
XM_036975409.1 mRNA upstream 249280 13743533 ~ 13770898 (-) False LOC110510240
XM_036975407.1 mRNA upstream 249280 13743533 ~ 13775565 (-) False LOC110510240
TU258842 other downstream 149067 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 268927 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 313170 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 426085 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 1020382 12472299 ~ 12473060 (-) True G225171
TU259125 other upstream 432421 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 505483 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 934540 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 1028927 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 1029003 14523256 ~ 14524854 (-) True psenen

Expression Profile