RNA id: TU258905


Basic Information

Item Value
RNA id TU258905
length 1285
lncRNA type read_through
GC content 0.42
exon number 4
gene id G226340
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13517724 ~ 13587278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttttttttTTTTATCACAAAGGTATCTTTATTGTTCAGCTCATTGTGTTCCAGGTTATTAAAGCAAGCCATAACAATTACACAGAGATGATGTCAGTCTCTTCACAGAGGTCGAATATAACCTTGGTGTCTGTCGGCACAACGCAAGTGTCAGAGTCACAGCAACCGCGTCACCAGACAAGACAGCGCAAGAAGCGtagtggtggggggagggggagctCTTAGACAGGCAGGGTCAGAGGTGTACAGGCTTACTACTGCTTGGGGAAGGTCTCATCGATCTTGGCCTTCATCTTGTCAAACTGCTCAGTGAACCAGGTCtgGTTTTGGTGATGAACTCGCTGTCCCCAATCTTTTCAACTATGTCCTTGGTCTTGACGGTCAGGTCCTCACTTAGGTCCTTCATCTGATTGCCGAAGGTGGTGAAATGCTCCTCAATGGTCTTCTCAGCCTCCTGAgcctctgtGTGTGTGCGGCGAACACAAGCATCAACACGGCAATGGCAATGGACAGTTTCATCTTGACTGTTGGCTGCAAGGGAAGGAAATTTAGCAACAAAACACCCTGCTTTTAATATCCTCCATCATAAAAAGGTTTGCATGATGAGTTAGTTATGAGTTCAAACAAAATTGAAGCGTTACGCTGTCAGGGCTTCACCAGGAGCTGTACTAAACAAGTGAAAATGATCAAAAGCTGTTATGTGTTATAGCGGAAACCGTTCAGCTGCATGTGTGGCTAGTGAAAGAGCGCTCCCGTGCGGTCAGCACAGTGGACAGCTCCCTTTGCGTTCTCTAGCCATCACACATCTTCGATTGGTGGCTTCACATTAGCAAGAAAAAAAAACTTACATTTTACATGTTAGATTAAACTTGACCTACATTTGATTAAATTAGTAGACTAACATAAccatttattataataatatctGTCTTCAGCATTGGAATGGCGCTCAGAAACAGAAGATAGGCTGGATGTCTTTCCCACTGTATAACTACACCTAGATGTCGGCACAATACCACAAATTGATTTTGAGATACTGGTATAGATTTATGGAAAGTTTGGggtataaaataaacaaatacattgGCGACATTCTCGTGCATTTATTTTTAGTAAATAAACTGATGAACAAAAGTCTCAGATATACCGGCCTATGTGTTTGCTCAGATAAGAGCAAACACATGCAAAGATAGACATTTGAAGTAAAAACAATGAAAGGAAGTCTCCAGAAATGCTAGTGATAAGTAGGTTAATCTTACCTGTTTTCTGTCTCAGAGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258920 lncRNA downstream 23471 13493442 ~ 13494253 (-) True G226355
TU258940 lncRNA downstream 24631 13492685 ~ 13493093 (-) True G226375
TU258939 lncRNA downstream 25312 13492151 ~ 13492412 (-) True G226374
TU258937 lncRNA downstream 29418 13488054 ~ 13488306 (-) True G226372
TU258936 lncRNA downstream 30007 13487006 ~ 13487717 (-) True G226371
TU258990 lncRNA upstream 33277 13620555 ~ 13623391 (-) True G226422
TU258997 lncRNA upstream 51527 13638805 ~ 13639774 (-) True G226429
TU259015 lncRNA upstream 104147 13691425 ~ 13691641 (-) True G226446
TU259016 lncRNA upstream 105678 13692956 ~ 13693168 (-) True G226447
TU259055 lncRNA upstream 160861 13748139 ~ 13811352 (-) True G226484
XM_021591565.2 mRNA downstream 35783 13480119 ~ 13481941 (-) True LOC110510190
XR_002470685.2 mRNA downstream 43227 13463634 ~ 13474497 (-) False LOC110505114
XR_005041143.1 mRNA downstream 44024 13463634 ~ 13473700 (-) False LOC110505114
XM_021591554.2 mRNA downstream 58676 13440784 ~ 13459048 (-) True LOC110510175
XM_021591547.2 mRNA downstream 58823 13440784 ~ 13458901 (-) False LOC110510175
NM_001160511.2 mRNA upstream 130966 13718244 ~ 13723892 (-) True rs19
XM_036975409.1 mRNA upstream 156255 13743533 ~ 13770898 (-) False LOC110510240
XM_036975407.1 mRNA upstream 156255 13743533 ~ 13775565 (-) False LOC110510240
XM_036975411.1 mRNA upstream 156255 13743533 ~ 13775565 (-) False LOC110510240
XM_036975408.1 mRNA upstream 156255 13743533 ~ 13883559 (-) False LOC110510240
TU258842 other downstream 173349 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 293209 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 337452 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 450367 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 1044664 12472299 ~ 12473060 (-) True G225171
TU259125 other upstream 339396 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 412458 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 841515 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 935902 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 935978 14523256 ~ 14524854 (-) True psenen

Expression Profile