RNA id: TCONS_00029195


Basic Information

Item Value
RNA id TCONS_00029195
length 2332
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_014792
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24262263 ~ 24267823 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTCACTGAGAAGGAAGGTgggtttagttttgttttctctcTGCCCGAGTGGGAGGATTCAGGATGCCAGCCAAGATGTGACAGAAGCTATGGGAAGCTGAGAGTGTGAAGTATATCGAGTACAACACGACGGCAAGAGTAAAGTTTTCTAGAGCCaagaaaatataacaaaccaaatCAAATGGCGACTCAGTATTCTGACCTTGAGAAGGCCATTAACACCCTGGTCACAAACTTCCATGCTGCTTCTAAGGATAACCAGCCTACGCTGAAGGCAGATGAGTTCAAGAACCTTCTCTCCTCACAGCTGCCAACTTTGATCAAGTCGGAACAAGTTGGTGAAGTGATGAAGCAAATGGGAGTGAAAGATGGGGAAGGCATCAGCTTCAAAAACTTCTGGGGCCTGATTCAGAATTTGGCCACAACCCAGCATGGTCTGCTGAGCCACGAGAAGCTGTCTAAATGCACCTGCCTTTTACTATGAGCCGCCTGCGTCAACTGCATCTGCCACTACGATCTGGGCTCTCTGCATTTCTCCAGTACCACTCATCTTCTAACAATACTCTAACTTTACTTCCTAACCAGTTAAATAATGTCAACATAAACACTATTTGTACTTTGACATGTCTTAACATaataatttagtatttaaaaaaaatacaatatttactttttaagaactaCAGTAATCATCTCTCTTCCAATCAAGTAAACCTTAATGTGCATACAAGTTAAACTTACTACTTCTTATACCACAACCGAACTGGAGTTTTCATTTGTTACTGGAGTTACATCTTCCCACACAATGCATTTAacttgaatgtgtttttttttccagcctTGTTATATAAAAGTGTACACACTACATTTAAACTAACTGGCATAATAGTTTATGATATGTGTATTTTAAAACACAGATATGTACTTAGTGGTTTTAGCGGACAACTactaaaaatcatttatttatattttttgatacTGTTTTATGGCTAAAATCAATAAAACcatgacttattgtttaataaaattcaCATCAAACAAGTCTcttgttgatattttattattaaatgtattaatgtttatATAAGCTTTACGGTgagttttattttcttaataaaaagcTGACACTGTGCATCTGCAACAATATTGGAAGTTGTTTTGCCTAAAGAAAAAAAGTTGATCTGGTCTTCTAATAGATATTAAATGTCTTAAGATCTGCACTCAATAAGGGTACATGCTAATATATCAATACATTTGATTTGTTCTCATGAGAACTTTGTGTTTGCCACAAAGTTTTAGCCACACAAAAGTCGATCAAGATACCTTGCATTGTATATTTTGTTGCATTAAAACATTCCTTGCACACTCATCTACTGAGGTTATTCAAATAGAGAATTCCTTTTTGAAGCACTTGCAAAACCTTAATTTAAGTCACTCCTAATGTAAATTGCCTCAATTTGCATTAAGACAGTTAGTAGGTGAACAGATCAGTTTTCTTAATTCATTACTGTGCCCAAATTGCGAGTTTTTTTTCTTACTAACACTTTTTTTGTCttcatcaaaactttttttttttttttttttaattaaacccaCACAATCTACATGTTGGTCTGTGAAcacttgtcaatttttttttaaaagcatgtctTTTGCGTGCTTTGAAAAATATCCATATGGTGTTGGGCCTACTTTTCCAGCCAATACATCACCAATTCATCTTgagaatgacagatacaagtcctgcacagtcgCCAGAgcgatgctggtggaggaaaatgtttcggcccgccgaataccttgagcaaaagagggccagctgggccttcggggcggagtgaaaggagaggcggactttGCCTGAGTCTGTTAAAGATGGCATGCCGTCATTACACTGGTTTActgatcgcacacgagtacatgcggcaAACAAGCAAATAATAAGGGAAAGAACATATAGCTGGTCAGTTTAATGGTATTCCACAAGACACCTTATAGGCTAGGGGTCTTTTTGCTtttgatcacccttatgtttcccttttaaggctgttgcataaaataataaaatagttttatttataagtgacttttctttgctgcatcctccttgatgtttcagtAACGCAATAacaataatctttacaccatattaaggACACAGCAGCCAGTAGTTtatcgagagtttttgtcaagtttaaaaagtgtgtttgtgcgtgATACGTGCGCATTGTGAGACCTGTGTTCGCTTGTATATCAAAAACATGCTTTATACcaacaaatactttataaatgttaattactaacctttctataaacataatttgattataa

Function

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8909 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; gut; and hematopoietic system. Orthologous to several human genes including S100A14 (S100 calcium binding protein A14).

Ensembl:

ensembl_id ENSDART00000104083

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030233 lncRNA downstream 46917 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 116586 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 199036 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 404671 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030230 lncRNA downstream 493062 23768644 ~ 23769201 (-) True XLOC_014775
TCONS_00030234 lncRNA upstream 120655 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00029777 lncRNA upstream 419300 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030236 lncRNA upstream 485121 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA upstream 485121 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029208 lncRNA upstream 489135 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00029194 mRNA downstream 37971 24221868 ~ 24224292 (-) True XLOC_014791
TCONS_00029193 mRNA downstream 38121 24221868 ~ 24224142 (-) False XLOC_014791
TCONS_00029192 mRNA downstream 43321 24214225 ~ 24218942 (-) False XLOC_014790
TCONS_00029191 mRNA downstream 64079 24196088 ~ 24198184 (-) True XLOC_014789
TCONS_00029190 mRNA downstream 64124 24196088 ~ 24198139 (-) False XLOC_014789
TCONS_00029197 mRNA upstream 152283 24419693 ~ 24443394 (-) False XLOC_014794
TCONS_00029199 mRNA upstream 152283 24419693 ~ 24443867 (-) False XLOC_014794
TCONS_00029198 mRNA upstream 152283 24419693 ~ 24443867 (-) True XLOC_014794
TCONS_00029200 mRNA upstream 181174 24448584 ~ 24484758 (-) True XLOC_014795
TCONS_00029201 mRNA upstream 278321 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029189 other downstream 73520 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 79372 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 122369 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 344129 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029209 other upstream 489433 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 489783 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029214 other upstream 789402 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 879376 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 1251010 25518420 ~ 25518540 (-) True XLOC_014813

Expression Profile

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