RNA id: TU258320


Basic Information

Item Value
RNA id TU258320
length 1634
lncRNA type antisense_over
GC content 0.49
exon number 7
gene id G225841
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13886549 ~ 13902578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAATTTCTCAAATCAACTTTATATCATGACTATTATAAGTACAGGAAATACAGCAAATAGATAGCTCTGAGTGTAATGTTTGAAAGTGCTTCAGTTGTCATTGGAATATAGAGATGCAAAATAATCTACAAGTGTACATCTTGTCTGTATACTTTGAAGTGCGTCACCACTAGTATGCTACATAAGGTTATACATTTCCTTGGAAAAAAATCCACACCAATATTCTACACCACGTAATAGCATTGAGGGGAAAAGGCACATTTGTGATACAGCAGTCACATTACACTTGCAACGTAAGAGACATTCCTTTCTGTGAGCCCAAGGCTGCaaaagtggtggtggtggtgagcagTTTAACTCAAGGTAACCTCCTTGTGAAAAATGTCTGCAGCTGCTTAGGGTTCCCACAGTATCTAAGACTCCTCCCCCTCACCTTGCCTCAGATAAGAACGTGAATCTCAATTTTGCAGGTTGCGAGATCAATAAAGAGAAAATTGCACACCTTTTGTTCAAGAACACTTCAGCCAACCCCGCTGGAAGCAAACCACCCCAGTAAAACAATCATTTGTCTCCCTCCTCTTACACGCAGCCAGCCTTTGATAATAGCTTCGATTTTACTCTGCATCCATAATCCAGGCACCTCTCCTCCCACCTCGACATCTTCCCTCCTTCCTATTCCTCACTCCCTTTCACCATCTTTCTCCATTTGTTCCCCtacttctcctctccatctcttggCGCGGTCACACCAGTGGTTGTTTGTCTCCACTGGTAGAAGCCAGAGACTCCACACTGGCTGTGTAGATGGGCTTCTTCTGAGAGTGGTCATcaATGGGTCCCTTGGTGCTCTTGGCCTGCTTGGCCCTGCGGACCAGGAAGACGGTGATAGACAGGATGAGCACCAGGAGAACCGCCCCCGCCACGGAGGTCATCAACACCAGGTTGGTGGAGTCGTACCAGGCTTGGTTGAGACGGCCGTTGGTGGCTGGCAGCACAGTGATGGAGATGGTGCTGCTCTTCTTCAGGCTGGACAGGGTGGGGTGCTCAGCCATGCAGGTGTAGTCTCCACCATCCTCCATCCTCACATTCTTCAGCCTCAGCTTGGAGGAGGGCACGATCCAGTCCTCTCCATATTTCTGCCAGAAGTATTGTGGTGCCTCAGAGGCTGTGGTGGAGCACTCCACCTCTACGTCTTCGCCTAGTGTCACAAGCAGGTTTTCCTTGATGAACTTCCGGCTGGAGGAGGACACATCGTACACAGACAGCTCACGTATGTATTCGACGGTGATAGCCAGGGGCTGGGAGGAGTTGTCGGGTGCCGTGGCGTTGTCTGCGACACAGCGGTAGAGTCCTTGGTGGAAGTAGCTGACGATGCCGCGGATGGACAGAAGCAGTTGGCTCGCCTCACGCCTCAAGATAACACCAGGGATACATCGCCGGTACATGGACTCCTCCTCCAGTCGATACCACTTATTCATGTACTTGGAAAACTTCTCAAAGTGGACTTGGCTGGTGTTGAGCTCCGAGTCAGAAAGCAGACATTCCAGGGTGACTTCATCGTTCTCCAGAACAGGCTTGTCTGGTCCCTGTATGACCAGAGCCGttttatttaggaatgtagtggagtaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258187 lncRNA upstream 3012 13761191 ~ 13883537 (+) True G225730
TU258269 lncRNA upstream 57374 13828730 ~ 13829175 (+) True G225795
TU258240 lncRNA upstream 101523 13781072 ~ 13785026 (+) True G225773
TU258239 lncRNA upstream 103447 13780992 ~ 13783102 (+) False G225773
TU258229 lncRNA upstream 118275 13767493 ~ 13768274 (+) True G225766
TU258393 lncRNA downstream 58021 13960135 ~ 13960360 (+) True G225882
TU258397 lncRNA downstream 60351 13962465 ~ 13963863 (+) True G225884
TU258415 lncRNA downstream 81674 13983788 ~ 13984018 (+) True G225897
TU258348 lncRNA downstream 84555 13986669 ~ 13987966 (+) False G225857
TU258347 lncRNA downstream 84626 13986740 ~ 13988035 (+) True G225857
XM_021591612.2 mRNA upstream 345223 13539000 ~ 13541326 (+) True LOC110510221
NM_001161448.1 mRNA upstream 353863 13529662 ~ 13532686 (+) True apoa2
XM_021591590.2 mRNA upstream 366516 13517655 ~ 13520033 (+) False LOC110510206
XM_036963055.1 mRNA upstream 374653 13504095 ~ 13511896 (+) True apoe
NM_001124346.1 mRNA upstream 375382 13504087 ~ 13511167 (+) False apoe
XM_036975415.1 mRNA downstream 99038 14001152 ~ 14003950 (+) False LOC110503682
LOC110510707 mRNA downstream 171286 14073400 ~ 14075519 (+) True LOC110510707
XM_021591887.2 mRNA downstream 238172 14140286 ~ 14143938 (+) False LOC110510523
XM_021591989.2 mRNA downstream 302793 14204907 ~ 14219816 (+) False LOC110510755
XM_021591992.2 mRNA downstream 309383 14211497 ~ 14219816 (+) True LOC110510755
TU258162 other upstream 240538 13645569 ~ 13646011 (+) True G225710
TU258117 other upstream 335967 13550098 ~ 13550582 (+) True G225672
TU258116 other upstream 339571 13545873 ~ 13546978 (+) True G225671
TU258078 other upstream 366514 13517648 ~ 13520035 (+) True LOC110510206
TU258095 other upstream 392114 13493885 ~ 13494435 (+) True G225651
TU258352 other downstream 88122 13990236 ~ 13992021 (+) True G225859
TU258417 other downstream 101188 14003302 ~ 14003926 (+) False LOC110503682
TU258418 other downstream 101188 14003302 ~ 14003926 (+) True LOC110503682
TU258443 other downstream 144472 14046586 ~ 14046848 (+) True G225920
TU259324 other downstream 376318 14278432 ~ 14279855 (+) False LOC110510822

Expression Profile