RNA id: TU258319


Basic Information

Item Value
RNA id TU258319
length 4696
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G225841
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13886549 ~ 13902578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctgaacgtcagctcttttctctaacctgtatggaacacaatatatggtctatacttggcatgtagatAGATGTCTTACTTATAGATGGCACAAATTGGGATAGGGGAATGGGCAGagtatatgcaaataaaaatacTGCAGTATTTACTTTAGTTTAAaaagtgtagtgtttttgcagacattactgtagtatttactatagtattctgcaacattctatagtaagtactacacatgatagagggatactacagtgtgtagtatagttttCTACAGTATACCACATAATTCtacagtaagtactgtagtattctatagtaaactgtagtattttttcatgtgggcagGGAAGAGATCAGGGAGGAAGTCAGCGACTGGGTCTAGCTGGTCACCGCTACTGGGACATAGCGGTCTACaagaacactaacacacacagtaaatccACCTTAGCCTTGGTACTATCGTAAGAGTCAGAGTGAAATATAAGGCAATAGATATAATATATTGGCCTGGCTATAACCTGGGATaaatggaagaggagagggaatgagATAAAAGAAAGGAggggcaccacacacacacacacagggagagggagagagagaggtgaggagggcaCTGTGCCACAGAGCTCAGCACTCACATGGGTCCCTTGGTGCTCTTGGCCTGCTTGGCCCTGCGGACCAGGAAGACGGTGATAGACAGGATGAGCACCAGGAGAACCGCCCCCGCCACGGAGGTCATCAACACCAGGTTGGTGGAGTCGTACCAGGCTTGGTTGAGACGGCCGTTGGTGGCTGCAGGCCGGAGAGTCAGACACACTACAGGCTTTAATACCAGATGATTCACAGACAGTTTATTTTGTTAGCCTAGCTCCATACTGTCCATTTCGTAGTGTATCCAACTCTACTGGATAAAATGGTTataatctgaccctgctggtcatctatgaacgtttgaataTCTTGAaaaacaatctggccttaatggccacatgcatctccacccggtacagccagaagagcctgattcctctctaggtttcttcctagcctCTGTGCTGCTTCATCTGCATAGCTTGCTCTctgcggttttaggctgggtgtctgtaaagcactgtgacaactgctgatgtaaaagggctgtattaaatacatttgattgattaaaaATAGTGTAAAATGAAGTGCAAATGATTGTTCACTACGATTATTCACTTCCACTTCATACTGAAGCAGTGTCTTCACTGTTATAATTGACATGCATCCAGTTTGATTGGCGCAACTGACTTGGAGGCTAGATAATTGAAACGATTGTAATCTCAAGGATTATAATTGACTCTATATTGGCGATATGATCGTGTGGAAAAACCCGTGACCATTAATGCAGCGTAATCATCTCACAGGTCGCTGATAAAAATGAACAATGATCAGTATGATAAATTGGATTAGCTGTAACTTAATGAGTTCTCTTCTTCAGTGACATATTTAGTGTCCTAAGACACGTCCTCCGCAGTGGCCAGTTGCTCTCCTCCATCACATAGCCTAAGACCCTCGCCTTCACGGGAGCTCCTCCTCCCCATAAGTGCCTTGGccctaacatctgtgttcctcGCCCTCCCTCCTCTTATTCCTGCTTGCTAACCCCTACACTTACTGTCCCTCTTCATAACACCAACCCCTGTAGTCCCCGCCTTCCTGACCCCTACCTACCTGGCAGCACAGTGATGGAGATGGTGCTGCTCTTCTTCAGGCTGGACAGGGTGGGGTGCTCAGCCATGCAGGTGTAGTCTCCACCATCCTCCATCCTCACATTCTTCAGCCTCAGCTTGGAGGAGGGCACGATCCAGTCCTCTCCctgatagagggaaggatggtggatgagagagagagaggagagagagagaggggtgcgaATGGAGGAGAAAGCGAGCGAACGAGTCAAGAAAATGATTCTCAGTGGAGTTACAGTATGCGTGTCCCTGTGACAGAAGCAATAAACTCCCAGACAAGGTGTATTTACCTGAACAAATTGAATCAATTCCACATAAACTCAATTCACTGACCTAGATGAAGCAATCAGCAAAGAATAGCACGGCAACACTGTTAACAACACATAAGGAGAAAACGGGAGGCACAGTGGACACAGAACTAGCTGCTGGGCCATTATTAAGAGGGAGAGTTAGACACAGTAGGGGAGAAATAATAAGAGAAACAGAAtagaaacaaaccaaaaaaaGACACTACACCTTGCAAATGATTTGGTTCCTGGGATCTCACATTTTCCTGCCAAGAAAGTCAATTTCAATTTGAATGAGGGGCTGAATTAAGAGGATTTCCAGGAAAGGCCAGGTTTGGCCAAAACAGCATTCTGCATGGAAATCCACTGGCTCAGATGCATCCAGTCTCTTGCCTGCCTCCTATGGACATTACTGGAGACCGGGACTGTGCAGTCAGTCAGCAGCTGCCCATCAAATGGCCCATACTGTTTGTTTCTCTGCCCCTATAATTCCTCCCATCCCCATCCTTGAATATTTTCTACCCCAAATCCAAATGTATAAAGAGTTATGCAAATAGTATAGAATGTGTGGACAGACTGGTTCAAAAGGTAGATGGGGGATATTTGAGAGTGGATTCTTTCTAAAGACATTCAAATTcagaaaaatgtattaaaatgaggACTAACTTGATTTTAAAGGCGTGAAATTGCATCAGGTCTGAAATAGTGGACCACAATGTGCTGAAGTAGTGATACCTTATTTTACCACTAGGGAGCAGCAAATCAATTCACCAAGGTCTTATTGTTGCCTGCATGGCCATTCGGGAGTCTTAATTCCCCTGGGTATTTGGTTTGTGGCTTTGGTAACAGCAAGTTGAATAATTCAACAATGATTAACTGAACATTGAAAAATCATTAGGATTCTATCAACAGATTGGCTTTCAGGTTGCCACTTGTCTAGACCTCATTAAACTATTAATCCTCTGTAAGTGGGCAGGCTGCTCTACAGAAAGACGGGGCCCCAAACCAGGGAATAACAATGAATACTGAGCACCTCTTATGGTGCTGAGAGTGAAAGAGGAGCGGGACAGAGATCGAGCGATAGAAGGCCAGATCCTGACAGGCCCAAACTCACATATTTCTGCCAGAAGTATTGTGGTGCCTCAGAGGCTGTGGTGGAGCACTCCACCTCTACGTCTTCGCCTAGTGTCACAAGCAGGTTTTCCTTGATGAACTTCCGGCTGGAGGAGGACACATCGTACACAGACAGCTCACGTATGTCTGAACAGGGAATCAGAAACACAGCAGAGACGTAGAATAAAAGAAGAATGCATGCATGATGGTTTTAAGAGGTTTGAGTGCGTGTGTGCAGCTGTGCACGGTGTACAAGCATGCATAAACATGAGTCAACAGAGCCATATCCCTGAGTATACTGCAGTATCGTGCCTCAAATCCTCTACAAATTGCCCATGAGGAGGGAACAATCAGATAATGGTAATTGCCTTCATCTTCCTAAGTCCTCACAATGGTGCACTGTGGAGTGTGACGGTTCATTTTCTCCCACTCTACGTCAACGGAACCATCTCCATGGGCCTTGggctctctccttctgtccacaCAAATAATTCCCCATTATCGATTGCTCCACGGGCAAAGAAGCCTATCAAAAGACATGACGGACGATTTGATCGCCCCTGTAGCGCAAGGGAAAATAGGCCTCACGCTATGACCACCCTTTCATGTGCCTTGTACAGTACAATGTGTCTCTTCTTCTGGTTATTTGTATTTCTATCTATCCCCTGTGAATTTCCGTTTCTGGAACATTGTTTTTGAAAACAAGGAGAATGGATATACTGTACGGTGGAGTGGATAGCAGGCGctcctcctggagagctactaCTGGGTGTGCAGGGGTTTGTTCCAGCACACCACAGAATTTAGCTAATCAAGGTTCTGGGGAGCAGCTGATACAAATCAGGTGTATTAAAGCAGGGTTGTATTAAAAGCCTGCATGCCCAGCAGCTCTCCAGAAGGTTTGGTCTTTCCTGCGGTGCAGAATTAttggccatttaaaaaaatatttaaaaaataaacagctGTTACAGACAAGCATGTGACTAATATTGCCCACCCTATACTCACATTCGACGGTGATAGCCAGGGGCTGGGAGGAGTTGTCGGGTGCCGTGGCGTTGTCTGCGACACAGCGGTAGAGTCCTTGGTGGAAGTAGCTGACGATGCCGCGGATGGACAGAAGCAGTTGGCTCGCCTCACGCCTCAAGATAACACCAGGGATACATCGCCGGTACATGGACTCCTCCTCCAGTCGATACCACTTATTCATGTACTGGAAAACTTCTCAAAGTGGACTTGGCTGGTGTTGAGCTCCGAGTCAGAAAGCAGACATTCCAGGGTGACTTCATCGTTCTCCAGAACAGGCTTGTCTGGTCCCTGTATGACCAGAGCCGCAATACTGCTGTGAGCATGTGCAATTACTAAAATCGCAAAGAGTATAAAACCTCTCATGTTTGTTATTGGATTCTGGGTATTGATGAGTATTCCCACTCTGCTTCACTGTCTGTATCCAAATACTGCAAGCCCCTCTGAATGTGGAAAGGAACGTCTGGAACTGTACTTATTGATACTGGGGAGGCGTGGCTTCCAGGGTTGTCTTTCTTTCAAAGTTTGGAAACAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258187 lncRNA upstream 10265 13761191 ~ 13883537 (+) True G225730
TU258269 lncRNA upstream 64627 13828730 ~ 13829175 (+) True G225795
TU258240 lncRNA upstream 108776 13781072 ~ 13785026 (+) True G225773
TU258239 lncRNA upstream 110700 13780992 ~ 13783102 (+) False G225773
TU258229 lncRNA upstream 125528 13767493 ~ 13768274 (+) True G225766
TU258393 lncRNA downstream 57557 13960135 ~ 13960360 (+) True G225882
TU258397 lncRNA downstream 59887 13962465 ~ 13963863 (+) True G225884
TU258415 lncRNA downstream 81210 13983788 ~ 13984018 (+) True G225897
TU258348 lncRNA downstream 84091 13986669 ~ 13987966 (+) False G225857
TU258347 lncRNA downstream 84162 13986740 ~ 13988035 (+) True G225857
XM_021591612.2 mRNA upstream 352476 13539000 ~ 13541326 (+) True LOC110510221
NM_001161448.1 mRNA upstream 361116 13529662 ~ 13532686 (+) True apoa2
XM_021591590.2 mRNA upstream 373769 13517655 ~ 13520033 (+) False LOC110510206
XM_036963055.1 mRNA upstream 381906 13504095 ~ 13511896 (+) True apoe
NM_001124346.1 mRNA upstream 382635 13504087 ~ 13511167 (+) False apoe
XM_036975415.1 mRNA downstream 98574 14001152 ~ 14003950 (+) False LOC110503682
LOC110510707 mRNA downstream 170822 14073400 ~ 14075519 (+) True LOC110510707
XM_021591887.2 mRNA downstream 237708 14140286 ~ 14143938 (+) False LOC110510523
XM_021591989.2 mRNA downstream 302329 14204907 ~ 14219816 (+) False LOC110510755
XM_021591992.2 mRNA downstream 308919 14211497 ~ 14219816 (+) True LOC110510755
TU258162 other upstream 247791 13645569 ~ 13646011 (+) True G225710
TU258117 other upstream 343220 13550098 ~ 13550582 (+) True G225672
TU258116 other upstream 346824 13545873 ~ 13546978 (+) True G225671
TU258078 other upstream 373767 13517648 ~ 13520035 (+) True LOC110510206
TU258095 other upstream 399367 13493885 ~ 13494435 (+) True G225651
TU258352 other downstream 87658 13990236 ~ 13992021 (+) True G225859
TU258417 other downstream 100724 14003302 ~ 14003926 (+) False LOC110503682
TU258418 other downstream 100724 14003302 ~ 14003926 (+) True LOC110503682
TU258443 other downstream 144008 14046586 ~ 14046848 (+) True G225920
TU259324 other downstream 375854 14278432 ~ 14279855 (+) False LOC110510822

Expression Profile