RNA id: TU258348


Basic Information

Item Value
RNA id TU258348
length 1298
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G225857
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13986669 ~ 13988035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTTACATATTTAAAACTACTGCTAATGCACATATGTAGTAAAATGTCaaatatgttacattatgttttgCCAGAAGATAACGACCCTACCATTACGTTGATTTACACTGAGCTGTACTGGTGTCTGAACGAAAACATGGTTACATTGAGACATCGTGGAGCCGGCGCAAGATATGTACAATCTGGATAAAGGTAACATTTGGCATTCAGTGGCATATCCCATCCTTGGATTGAGGTACGTTTTCCGACCCGTATCTCGTGTCTGCTCCACAGTAAATTAATGTAACCATGATTGCCTTCCGACCCCCgtgcagctcagtgtaaacaagcGTATCTTCTGGCAACATTGTCATGTTGTTGATACAATATCAAAAACCCAACAGGTAAAGTTAGTTATTAGTTAATACAATACATTAATTTGTATACTAATCCATGCCACACTGTTTGGATAAAACGTGTGCTCCTCCCAATAACCCTAATTTCATAACTCTAGCACCAAAACAAGATACACGTTCACCCAAATGAAGACAGAATAAGAAATGACTCATACAAACGACTCATTATTCAGAGACCTGACAATTTGAATAACACCCACTACAACATtaagagagagcagaaagaacATGCAGAGTGTTTTGAAACAATAAAGGCACAAATATACAGTGCAACACAGGTGAAAACCACTTGTTTGAGGAATAAACTTGAAAATGGTGTAACAAAGACAGCAGTGTACACAGAAAGAAAAACTAACAAAAATCCATAAGTTGACAtacacactcagtggccagtttaagGTTCGCCCATCTAGTACCACTGACTGGGGcgaaaaacaaaaacattctcAGTAAACCCAAGACACTGTCGTGTGTGAAAAACACAGGAGGTCTGCCATTTATGAGATACTGTAACCGGCGCACCTGGCACCAACGATCATAATACGCTCAACGTTGCTTAGGTCACTTGTTTCGCCCATTCCAACATTCAATCGAATAGTAACTGAATGCTTCGGTGCCtcgctttatatagcaagccaagGCCACGTGGCTCACTGTCTATAGGAGCAAAATATTTTTGTGAACAGGGTGGTGTAGCTAATAAACTGGCCACGGAGTGTAAATCCTTGGTATGTTTACAACACAGTAAATATGATGGTACTGGCCAAGAAATCCACTACACAGTCATATTTCTAAGTTCTTTGCAGTTCAAGGCAAAGCTGTGAACACAGAAAACTGACAACCGTGCTCGATCAAGTTAACAAACTATACACTTTTTGAGATTATCTGACCCTTTCTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258415 lncRNA upstream 2651 13983788 ~ 13984018 (+) True G225897
TU258397 lncRNA upstream 22806 13962465 ~ 13963863 (+) True G225884
TU258393 lncRNA upstream 26309 13960135 ~ 13960360 (+) True G225882
TU258319 lncRNA upstream 84091 13893802 ~ 13902578 (+) True G225841
TU258320 lncRNA upstream 84555 13886549 ~ 13902114 (+) False G225841
TU258344 lncRNA downstream 5234 13993200 ~ 13996338 (+) True G225855
TU258346 lncRNA downstream 8602 13996568 ~ 13996976 (+) True G225856
TU258350 lncRNA downstream 9151 13997117 ~ 13997792 (+) False G225858
TU258349 lncRNA downstream 9190 13997156 ~ 13997877 (+) True G225858
TU258442 lncRNA downstream 58330 14046296 ~ 14046583 (+) True G225919
XM_021591612.2 mRNA upstream 445343 13539000 ~ 13541326 (+) True LOC110510221
NM_001161448.1 mRNA upstream 453983 13529662 ~ 13532686 (+) True apoa2
XM_021591590.2 mRNA upstream 466636 13517655 ~ 13520033 (+) False LOC110510206
XM_036963055.1 mRNA upstream 474773 13504095 ~ 13511896 (+) True apoe
NM_001124346.1 mRNA upstream 475502 13504087 ~ 13511167 (+) False apoe
XM_036975415.1 mRNA downstream 13186 14001152 ~ 14003950 (+) False LOC110503682
LOC110510707 mRNA downstream 85434 14073400 ~ 14075519 (+) True LOC110510707
XM_021591887.2 mRNA downstream 152320 14140286 ~ 14143938 (+) False LOC110510523
XM_021591989.2 mRNA downstream 216941 14204907 ~ 14219816 (+) False LOC110510755
XM_021591992.2 mRNA downstream 223531 14211497 ~ 14219816 (+) True LOC110510755
TU258162 other upstream 340658 13645569 ~ 13646011 (+) True G225710
TU258117 other upstream 436087 13550098 ~ 13550582 (+) True G225672
TU258116 other upstream 439691 13545873 ~ 13546978 (+) True G225671
TU258078 other upstream 466634 13517648 ~ 13520035 (+) True LOC110510206
TU258095 other upstream 492234 13493885 ~ 13494435 (+) True G225651
TU258352 other downstream 2270 13990236 ~ 13992021 (+) True G225859
TU258417 other downstream 15336 14003302 ~ 14003926 (+) False LOC110503682
TU258418 other downstream 15336 14003302 ~ 14003926 (+) True LOC110503682
TU258443 other downstream 58620 14046586 ~ 14046848 (+) True G225920
TU259324 other downstream 290466 14278432 ~ 14279855 (+) False LOC110510822

Expression Profile