RNA id: TCONS_00030234


Basic Information

Item Value
RNA id TCONS_00030234
length 3889
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_014793
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24388065 ~ 24393032 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgatctAGCATCTAGTCCTGTGACAGACTTCACATATTGGGCTTCGACTGGACTCTGAAATCCAAGCGAAAGACAAACAGGAAAATTCAGCTGTTCTTTGATCCACTAAAAAGAACAGGTCCTCATCATTTGATTATAAAACACATATTTGGCAATATATCACAATTTATCATTAATTTCTCCTACATGAAGACTTCACATTAGTACCATTCAGTGGAAAAACGACAAATGATTCGATTCGAACACTCTATAGTGAAAGTAGCTGCAACCACGGCCAGAATATTACTGTACCAAGACAAAACACAGCAACAACccatattttttttgtcattatatcTTTTTTCCCACCTAAATTTAAACCTAGATTCTGTTCTCCGACAGATTGATTTGGTTCAATTAtcagtgtaaaaactgaataaaattaaaGTCAAAGTCACTGTGTTTTGCCATTATGACACAGTCAAGTGGTCAACATTGAATGAGGTGAGCAGGCTACATACTTCTAGAACAGGTCCATGGTACCAAAGTAACACTCctcattatttttatattgatataattttgaaatgtaaaagaCAACAACATCTACCCGTACTTGTACAGTACACAACTGATCAACACAactttacaattaaattaaatgatcagCATTACACagaaaacttaaattaaaacacTTGAAAAGCACATTTGAAAGCTTCATTTCTGCCCTGGTGCTATGGTAAAGGGGATAGTCagcttaaaaaagaaaatgtgttatttattcaccttcatatggaagcttgtttccaccaccaattaaaaataaaggtaattgcaattttttatctgaattttttttaaacattttccacACTTGAGACCTTCGTTGTGAGAGATAAACTTGTCAGTATTTTATCTGAGTTCTGGattttataactcacaattcaaGTTTATAATAACAAATTTGAGGAAAGAATTGTGAATCAGAGTGGAAAAGTAAGAATTGTAGACTTATATctgcaaattctaaatatttaTCTTCTAATTTGTTTCACAATTATGCATATTTATCTTGAAAGACTGTCTAACCAAGCAAATGTGCTTTCATACCACAAAATTCTGAGAGAATAATGTCAGAACTGAGATAAATACCCCAATTACCTTTGTTACAAGCTTCCATAAATAGAAACAAAAATACTGCAtcacaaatgaaaataatttgaAACCAAACTGCTGGTAACCAAATAGTTTCAGTTCCCACAGACTGTCAATTCTAATGGAAGTCTATGAAAACCAAAGCTGCTTATTTACTCAACCTTAGGCCATCTGAGATGTAGGTGATTTTTTATTTCAGCAGAGGATTAAGGAGTATTTTTGGCTGAAACCATGCTCTTTTGTGATTCATAGAAgtcacaagtaaataaaaaaattacctttAATACACAGCCTCTGTGTATTTATGACAGTCATTAGTAAAGAAGATTGCTCAGCTTTACAATGCATTATCAGAAATGTATCATCATGGCTGTTCATTTAATTAtgctcatgtatttatttttgttgattcTCAAATTGCCAGCAGCAACAGTATTGGATTTTATGAATCAtcaaggaccacagtttcagctaaaatccTTCGATATTCTACTGAAAGGAAAAATGTCCTACACTATTGATGGCTGGATCTATACTCAATTCTAacttttattaaaagtttaagtttcatttttgagtaaactatcctgTTATGGAAAACAGAAAACCTAACTATCGTACCTCGTTTTGACATTCAAAATGTGAAATTAGACAAGAATAAGAAACAAAGGCAAAGACTAAGAAAGATGTGCGATATAGCGACTCTGAAAAAGGTGGAGAGAGTGAGTACTGGAAACTaaatgtttgcaaaatggaaaataGGATTTTGAAAACGATCATATGATTAGAGCCATAAagtttataatataaaatgactCTAACTGTttctaaaatcaataaaaatatcaaaaagtTCAATGGAAATCTTAAACTGTCATTTGAACTTGCCTGAAAGTGGTTTAAAGAAACAatccactttttttcttttgtaataggctcattttataaCTCCCCTAGACTTAAAAAGTTAAGATTGacaattttttaatccattcagctgatcagCTGGCAACTTTtaccttagcttagcataattcattgaataggattagaccattagcatcttgctccaaaaaagtttaaattttCCTATttctgtagtttatgtgtgtagCTCAATTGTGTAAGACCGATGAAAAAAAAGTTGCAGCAAGTGCAATTATATTATGCAGCAGCTGAAAAAAGTCCCCAGCTGGATAACTAGGTGAacttttttgagcaagatgctaatccggttcaattatttatgctaagcgaAGCGCTCAAGAGATCGGCTGAGTGGATTAAAATTGCTAAAACTCGACTGTtttcttgtaaaatgagcctattccAAAAAAAGTGGAAGTGTTTCTTTAAGAGAGGCATAACATCTGATATACTTTAGACTGAAACGAACAGTTCAGTTTACACATAAATTACAGCTTAAATATTAACAAACTGAAAAtgtacactagttcctagtgcTGAAGATCTTTTAGTCTTACGGCTCAAATGATTTATGAGCAGGTCCAGTGTGCAgtttctgactttatttctctcCTCTTAGATTTCGAAATGATCCTGCATGAGTGGTTCAGCGACAGGGCTTGATTCAGCAAAAGCCCGATTTGGCTCAGAAAAGAGTTTTCCAGTAAATCAAGAAAACCAGCACCATCAGATGGGTGTGTTGGGCAGGTGACCGTTAGAGCCGTTCAGCATGTTATTGCTCAGTGTGATTGAAGATTTGCCGTTATGTGCCTGACCAATGTGGGACTGTCCATTAGGAGCTTGTCCATTGCGCTTTTCCAAACGTGGTGAATGTCCTCTGAGAGACTCCCTCTCTTGCGGTGTCGCACTTCCACCCTTCTCAACGTCCCTGCGAGAGCAAGGAGTTTGTGCGATGGTCCTGCTGGTGCAAACATGTCTAAATCTGTTAAAAGCGATGGTTAGCAAGGCGCTAACACACAGCGCTAGCAGAACGGACACCACTACTAGCTCCTGCAAATAGGTTGGTTTATCCACTTGCTTGAAGTTTCCACTGCGTTCATTCATCCAGGAGCTTTCCTCTTCTGCACTAATCAAGGGAGTGAAGTTTTTGCTTTTCCGTGTGGTGGTTGCAGGTGAATCTTTGTGTGCAACAGTAGAACTTGGGTCTTCTGGTTTAGGCCTCAGCTCGGTGTGTTTGGGAGCTGTGGGAGTGGAAAAAGGGGTTTTGTTTCCAGCTTCAGCGGAAGTCGGTGTGATCTTCGGGGAAGACGGGAGGATGGTGGGATTGTTCTTCTGTTTAATATGGTAGACTATCAGTGTTTGGGTGTAGCCGTTCTCCACCGCTTGGCACAGGTAGTGGCCCAGGGTGGACGGGGTCGCCACAAAGCTGAGGCTGCCGTTGACTGACTGGATGAAGATTTTGGGGGAGAGCTGGCTGTTGAGACGCTCCCAGTGGCATTTAGCAAGGTTTGATGCTTCGGGGCATTGTAGGTTAATAACCTCATTGAGTGACACAGACAGCACTTCACCTGGGGGACAGAGAGCTGAGAAGGTTAGAGGTCAAGGGTCAGAATACAGACCACACCACGATGGTAAACACAGACATGCAGTTGATTGAGTACTGTGAATGGCACTTTACTTATTTTGAATACTTTGAGCCAATATCCCAGTTTAAtgtgagcacttttagcttagcttagcataaataattgaatctgATTAGGCAATTAGCATCATGtggaaaaatgttttgaaaaaacattttcaaaaacagcCTTTTTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030233 lncRNA downstream 172719 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 242388 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 324838 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 530473 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030230 lncRNA downstream 618864 23768644 ~ 23769201 (-) True XLOC_014775
TCONS_00029777 lncRNA upstream 293678 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030236 lncRNA upstream 359499 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA upstream 359499 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029208 lncRNA upstream 363513 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00029217 lncRNA upstream 691233 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029196 mRNA downstream 120242 24263553 ~ 24267823 (-) True XLOC_014792
TCONS_00029195 mRNA downstream 120655 24262263 ~ 24267410 (-) False XLOC_014792
TCONS_00029194 mRNA downstream 163773 24221868 ~ 24224292 (-) True XLOC_014791
TCONS_00029193 mRNA downstream 163923 24221868 ~ 24224142 (-) False XLOC_014791
TCONS_00029192 mRNA downstream 169123 24214225 ~ 24218942 (-) False XLOC_014790
TCONS_00029197 mRNA upstream 26661 24419693 ~ 24443394 (-) False XLOC_014794
TCONS_00029199 mRNA upstream 26661 24419693 ~ 24443867 (-) False XLOC_014794
TCONS_00029198 mRNA upstream 26661 24419693 ~ 24443867 (-) True XLOC_014794
TCONS_00029200 mRNA upstream 55552 24448584 ~ 24484758 (-) True XLOC_014795
TCONS_00029201 mRNA upstream 152699 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029189 other downstream 199322 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 205174 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 248171 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 469931 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029209 other upstream 363811 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 364161 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029214 other upstream 663780 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 753754 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 1125388 25518420 ~ 25518540 (-) True XLOC_014813

Expression Profile

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