RNA id: TU259363


Basic Information

Item Value
RNA id TU259363
length 586
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G226746
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14253745 ~ 14254330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGAAGATGCATATAGCAGTGGACAAACTGATGGCCAGCTCCCATCTGAAATACAAAGGTTAAACTGTGATGAGGACTTACACTCTGATGGCCTCCAGTAGGCACCTCTGGTGTCTGCGGTGCTCTCCACTGTTGCCCTTGGTCAGGTTGGTGCGGTGCAGCAGCCAACACTCCCTCAGCACGTTGGCAGCAGCATGGCGGATCTGGGACAGACAGAGCACCAACATCTAGACCCAGTCAATCAAACGTGCAGCCCTAACGTGTACGTGTGTGACACACACTCCTTTGTACAGAATGACTGTCACAGCTGGAGATAAGAGTATATGGAACGGTGATGCATTAAGCTAACACTCATGCGTATAGAATTACCGCACTAACCGGAAGGATGACAGCATGTCATAGCATGGTGTCATCTTGGGGGCATGTTTATATCATGGTGCCATCTTGGGAGGATGTTTAGATCATGGTGCCATCATGGGAGCATGTTTATATCATGGTGCCATcttgggtgcatgtttatatcaTGGTGTCATCTTGGGAGCATGTTTAGATCATGGTGCCATCATGGGAGCATGTTTAGATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259360 lncRNA downstream 4857 14248638 ~ 14248888 (-) True G226743
TU259356 lncRNA downstream 7941 14245596 ~ 14245804 (-) True G226739
TU259355 lncRNA downstream 11543 14241717 ~ 14242202 (-) True G226738
TU259354 lncRNA downstream 12371 14241125 ~ 14241374 (-) True G226737
TU259353 lncRNA downstream 13476 14240003 ~ 14240269 (-) True G226736
TU259365 lncRNA upstream 802 14255132 ~ 14255352 (-) True G226748
TU259366 lncRNA upstream 1074 14255404 ~ 14255640 (-) True G226749
TU259371 lncRNA upstream 8609 14262939 ~ 14263673 (-) True G226754
TU259372 lncRNA upstream 10208 14264538 ~ 14264778 (-) True G226755
TU259375 lncRNA upstream 12993 14267323 ~ 14267629 (-) True G226758
XM_036975413.1 mRNA downstream 61439 14148828 ~ 14192306 (-) False LOC110510806
XM_021591959.2 mRNA downstream 151464 14099401 ~ 14102281 (-) True fpr1
XM_021591865.2 mRNA downstream 157641 14084118 ~ 14096104 (-) True LOC110510492
XM_036975385.1 mRNA downstream 174760 14026102 ~ 14078985 (-) False LOC110510454
XM_021591815.2 mRNA upstream 16323 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA upstream 16323 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591800.2 mRNA upstream 16323 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA upstream 16323 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_021591906.2 mRNA upstream 134868 14389198 ~ 14397282 (-) False LOC110510581
TU259117 other downstream 251937 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 325912 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 909370 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1029230 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 1073473 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 174463 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 268850 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 268926 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 344459 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1282035 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile