RNA id: TU259372



Basic Information


Item Value
RNA id TU259372
length 241
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G226755
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14264538 ~ 14264778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATTTCAGGGTTGCGGTAGCACAGGGCCTGTGCCAGCAGCTCAGAGGTCTGTTGGAAGCAGTGGCTTAGCTCATCTAACTTCTGCTCCATGGAGATGATACGCTGCTCCAGCTCCCGGTAAGAGTTGTTCCAGTTCGCACTCAAGTCGCACATGATCATCTGCATCTGTTCaccatcaatcaaccaaccaaacaAACATGATAATCTGCATCTGTTCACCATCAATCAACCAAACAACCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU259371 lncRNA downstream 865 14262939 ~ 14263673 (-) True G226754
TU259366 lncRNA downstream 8898 14255404 ~ 14255640 (-) True G226749
TU259365 lncRNA downstream 9186 14255132 ~ 14255352 (-) True G226748
TU259363 lncRNA downstream 10208 14253745 ~ 14254330 (-) True G226746
TU259360 lncRNA downstream 15650 14248638 ~ 14248888 (-) True G226743
TU259375 lncRNA upstream 2545 14267323 ~ 14267629 (-) True G226758
TU259377 lncRNA upstream 8324 14273102 ~ 14273192 (-) False si:dkey-79d12.4
TU259378 lncRNA upstream 12140 14276918 ~ 14277086 (-) True si:dkey-79d12.4
TU259381 lncRNA upstream 19808 14284586 ~ 14305692 (-) True G226764
TU259390 lncRNA upstream 43697 14308475 ~ 14308908 (-) True G226771
XM_036975413.1 mRNA downstream 72232 14148828 ~ 14192306 (-) False LOC110510806
XM_021591959.2 mRNA downstream 162257 14099401 ~ 14102281 (-) True fpr1
XM_021591865.2 mRNA downstream 168434 14084118 ~ 14096104 (-) True LOC110510492
XM_036975385.1 mRNA downstream 185553 14026102 ~ 14078985 (-) False LOC110510454
XM_021591815.2 mRNA upstream 5875 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA upstream 5875 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591800.2 mRNA upstream 5875 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA upstream 5875 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_021591906.2 mRNA upstream 124420 14389198 ~ 14397282 (-) False LOC110510581
TU259117 other downstream 262730 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 336705 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 920163 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1040023 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 1084266 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 164015 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 258402 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 258478 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 334011 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1271587 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile