RNA id: TU259761


Basic Information

Item Value
RNA id TU259761
length 1532
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G227094
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14496793 ~ 14498854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaataaaaacacaacAAATGCTTATCAGAATCCAGCTTTATTGGTTGTGATATATTCAATCTGATAAAAGTGAAGGTTGTGTGAACTGCACAACAGCACAAGGCTGTAGGAGCCTGCCGTAGACATAAATATTACACAGGATGTTCTCAAGAGGGGAAGTGATGACACAGGCCAGATCTGCAGTAGGTGTGAAGGGAGCTGAGATGTGGACAGGATGTGGATTCTCTCCTGTAGAGGTCAGGGATTTTTGTCGACCTCCTTGATGTTTGGGCCAGAGGAGGAGCCAGCTCCAGCACCTCCAGGGAAGCCTCCTGGCATACCTCCTGGCGGGCCTCCGGCACCCTGATACAGATTGGTGGGGTTACTTACACACCTTCTCCAGCTCCTTCTGCTGGTGCTCATACTCATCCTTCTCTGCTGTCACAAAGAACACGTCCTCCGGGCTGATCTTTTCCGTGAGCTTCTTGTCGTCCACTGTGCTCTTCATGTTGAAAGCCAGGGACTCCAGCGAGTTCTTAGCTGTGACGTTCTCCTTCTGTGCCTCGTCCTCAGCCCTGTACTGGTCAGCCTCTTGCACCATGCTCTCAATGTCCTCCTTGGTCAGACGTCCTTTGTCATTGGTGATGGTGATCTTGTTCTTCTTGCCGGTGCTCTTGTCCACCGCAGACACATTGAGGAGGCCATTGGCGTCAAAGTCAAAGTTCACCTCGATCTGGGCGCAGGGGGGATTCCAGTGGGCTCAAACTTGCAGAGGATATTGTTGTCCTTGGTCATGGCTCTCTCCCCCTAATTCACCTGGATGAGCACTCCGGGTTGGTTTTCTGAGTATGTTGTGAAGGTCTGAGTCTGCATGATGGGGATGGTGGTGTTCCTCTTGATGAGCACAGTCATGACCCCTCCCGCCATCTCAATACCAAGCATCTTAAGTCCAGCAGCAGCAGGTCCTGCACGTTCTCTGACTTGTCACCGGCCAAGATGGCAGTCTGCACAGAGGCGCCATAAGCCAGAGCCTCATCAGGGATGATGCTCTTGTTGAGGTCTCGCCCATTTGAATAAGTCCTGCAGAAGCTTCTAGATCTTGGGGATACGTGTCGAGCCTCCCACCAGGACGATGTCGTGTATCTGGGCCTTGTCCATCTTGGCATCTCTCATAGACTTCTCCATGGGTTCCAGGGTGCTGCGGAACAGGTCAACGTTGAGCTCCTCAAAGCGAGCCCcgtaatggaggtgtagatgtcGGCACCTTCATAGAGAGAGTCAATCTTGATGCTGGCCTGGGTACTGGAGGACAGGGTGCGCTTGGCCCGCTCACAGGCAGTGCGCAGGCGCCGCACCACCTCTTGTTGCCGCTGATGTCCTTCTTGAATTTACGCTTGAACTCGCTGATGAAGTGATTGACCATGCGGCCTCCCAGGTGGGTGTCGCCAGCGGTGGACTTGACCTCAAAGATGCCATCCTCGATGGTCAGGATGGACACGTCTAAGGTGCCGCCACCCAGGTCGAAGAACAGGACTCTTGCGCTCACCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259735 lncRNA downstream 67348 14424463 ~ 14429445 (-) True G227068
TU259731 lncRNA downstream 79915 14415060 ~ 14416878 (-) True G227065
TU259676 lncRNA downstream 86713 14409102 ~ 14410080 (-) True G227015
TU259730 lncRNA downstream 90643 14405901 ~ 14406150 (-) True G227064
TU259669 lncRNA downstream 112882 14377464 ~ 14383911 (-) True G227008
TU259830 lncRNA upstream 99935 14598789 ~ 14637418 (-) False LOC110503689
TU259834 lncRNA upstream 99935 14598789 ~ 14638314 (-) True LOC110503689
TU259851 lncRNA upstream 120085 14618939 ~ 14623213 (-) True G227162
TU259855 lncRNA upstream 121414 14620268 ~ 14625116 (-) True G227163
TU259902 lncRNA upstream 215419 14714273 ~ 14714833 (-) True G227207
XM_021591983.2 mRNA downstream 15138 14475682 ~ 14481655 (-) True LOC110510742
XM_036975404.1 mRNA downstream 99510 14389198 ~ 14397283 (-) True LOC110510581
XM_021591906.2 mRNA downstream 99511 14389198 ~ 14397282 (-) False LOC110510581
XM_021591800.2 mRNA downstream 217651 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA downstream 217651 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XR_005039678.1 mRNA upstream 9552 14508406 ~ 14511632 (-) False antol
XM_021581777.2 mRNA upstream 9558 14508412 ~ 14511494 (-) False antol
XM_021581762.2 mRNA upstream 9558 14508412 ~ 14511632 (-) False antol
XM_021581769.2 mRNA upstream 9558 14508412 ~ 14511632 (-) False antol
NM_001165044.1 mRNA upstream 9940 14508794 ~ 14511520 (-) True antol
TU259726 other downstream 21627 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 494985 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 568960 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 1152418 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1272278 13223884 ~ 13224515 (-) True G226224
TU259714 other upstream 24326 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 24402 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 99935 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1037511 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 1102161 15601015 ~ 15601488 (-) True G228094

Expression Profile