RNA id: TU259587



Basic Information


Item Value
RNA id TU259587
length 296
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G226935
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14689650 ~ 14689945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGTGTCTTGTGCCGTCTATTCCCAGAGTTTACGGGGTAACCGAGGCTTTGCTACAAGAACTGAAGGAGGCGATCTACATCTACGAGAAACTCAAAGAAATCCGACACACCCTGATGGACGACAAAAAATACAGGGAAGCTGTGGTGGCTGATGTGATGACTTTCTGGCTCAATAAAGAGACCGAGTGACAATACATATTTGTTATTTAGATGTAACGCAATGGGTAACTATATGCATACGATGTTAGagagaataaatacattttttctttTGAGAGAACTTACAAATCATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU259583 lncRNA upstream 3137 14686204 ~ 14686513 (+) True G226931
TU259531 lncRNA upstream 66433 14618940 ~ 14623217 (+) True G226889
TU259479 lncRNA upstream 165136 14523181 ~ 14524514 (+) True G226845
TU259420 lncRNA upstream 219387 14468345 ~ 14470263 (+) True LOC110510729
TU259429 lncRNA upstream 299809 14389198 ~ 14389841 (+) False G226807
TU259551 lncRNA downstream 4671 14694616 ~ 14747965 (+) False G226902
TU259552 lncRNA downstream 4671 14694616 ~ 14726625 (+) True G226902
TU260025 lncRNA downstream 199433 14889378 ~ 14889745 (+) True G227323
TU260035 lncRNA downstream 206088 14896033 ~ 14896321 (+) True G227333
TU260056 lncRNA downstream 226107 14916052 ~ 14916301 (+) True G227354
XM_021582164.1 mRNA upstream 58488 14628884 ~ 14631162 (+) True LOC110503699
XM_036975379.1 mRNA upstream 88041 14525705 ~ 14601609 (+) False LOC110510370
XM_021591836.2 mRNA downstream 53776 14743721 ~ 14777153 (+) False LOC110510471
XM_036975396.1 mRNA downstream 55022 14744967 ~ 14777153 (+) True LOC110510471
XR_005041154.1 mRNA downstream 229654 14919599 ~ 14941872 (+) True LOC110510982
LOC118944476 mRNA downstream 253162 14943107 ~ 14984145 (+) False LOC118944476
XM_036969876.1 mRNA downstream 294826 14984771 ~ 14991394 (+) False LOC110510950
TU259410 other upstream 279569 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 299222 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 409795 14278432 ~ 14279855 (+) False LOC110510822
TU258443 other upstream 642802 14046586 ~ 14046848 (+) True G225920
TU258418 other upstream 685724 14003302 ~ 14003926 (+) True LOC110503682
TU259593 other downstream 13656 14703601 ~ 14703975 (+) True G226941
TU260071 other downstream 252205 14942150 ~ 14974977 (+) False LOC118944476
TU260067 other downstream 300575 14990520 ~ 14991294 (+) True LOC110510950
TU260122 other downstream 307214 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 307214 14997159 ~ 14998075 (+) True G227405

Expression Profile