RNA id: TU260033


Basic Information

Item Value
RNA id TU260033
length 297
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G227331
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14894249 ~ 14894545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTATTATCAATAAACTAGAATGGATTAGGATGCTGTTGGTGCCGATTCTATATGGATTGCAATTCGATACTTCaattttattgcgatttgatgttccaaacatattactcaccatatgtctgctgcagtgggacaagagagacatgagaaaagTTTTCATCAGTCAGGGAAAtaaaaaagtgctgaaaacatgttggtttCCAATTTTCTTTAAAGATGAGGACAAGCAATAGCAATAGGATGAAAAATAGCTGAGTTTTGGCGCAGAGACAGCTGACTAGCACTAGCTAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259902 lncRNA downstream 179416 14714273 ~ 14714833 (-) True G227207
TU259834 lncRNA downstream 255935 14598789 ~ 14638314 (-) True LOC110503689
TU259830 lncRNA downstream 256831 14598789 ~ 14637418 (-) False LOC110503689
TU259855 lncRNA downstream 269133 14620268 ~ 14625116 (-) True G227163
TU259851 lncRNA downstream 271036 14618939 ~ 14623213 (-) True G227162
TU260042 lncRNA upstream 5289 14899834 ~ 14900139 (-) True G227340
TU260199 lncRNA upstream 95918 14990463 ~ 14991406 (-) True G227472
TU260203 lncRNA upstream 102672 14997217 ~ 14998401 (-) True G227476
TU260162 lncRNA upstream 109742 15004287 ~ 15017987 (-) False G227438
TU260161 lncRNA upstream 120548 15015093 ~ 15022575 (-) False G227438
XM_021592051.2 mRNA downstream 60218 14780067 ~ 14834031 (-) False LOC110510856
XM_021592073.2 mRNA downstream 60218 14780067 ~ 14834031 (-) True LOC110510856
XM_021592055.2 mRNA downstream 60219 14780067 ~ 14834030 (-) False LOC110510856
XM_021592058.2 mRNA downstream 60219 14780067 ~ 14834030 (-) False LOC110510856
XM_021592067.2 mRNA downstream 60219 14780067 ~ 14834030 (-) False LOC110510856
XM_036969961.1 mRNA upstream 128980 15023525 ~ 15035282 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA upstream 128980 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036969951.1 mRNA upstream 128980 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969943.1 mRNA upstream 128980 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036970146.1 mRNA upstream 207808 15102353 ~ 15109931 (-) True LOC118936618
TU259832 other downstream 257539 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 369395 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 369395 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 419083 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 892441 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 641820 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 706470 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 811689 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 893077 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1944844 16839389 ~ 16839839 (-) True G229373

Expression Profile