RNA id: TU260162


Basic Information

Item Value
RNA id TU260162
length 2038
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G227438
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15004287 ~ 15022575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGTTTGTGTTAGTGTTGATAAATTGAGGCTGGTATAGTAGAAGCAGTGACTGTTTTATAAATAGCTATAGTAGCCTTTAGTGTAGTAAGTGGcccagaagtagtagtagcagtacatTCTAGTAATAATTCTGAATGTTTTAGGTAGGTAGGCCATGGGTTAGCTATAGTAAGTGGGGTCACTATTGTAGTTTAGTTAATGAGTGTGGGAGGTTGTTATAGTGGGTTGGGGTGAGCTGTATGGCATAATCAGTCTTATGTGCTCCCCCAGTGATTGGTAGATAGTATGTGGAAAGGTATAGTAATAGTCCCTCAGCCCATTAAAAGGTCAATTCAGTCCACCAACCCCAAAAGGAAACAAAAAGACTTTCAGTAAACAGTCAAATTTAGAGGTTTTGATGACCAATATGTCACACCCTCTACATTTGTATCCTACTTGCTGGGAAAATGGTCAACATTTCAGTTGTTTGTAAAAGTTGAGAAGAAAAGTAGTTGATTTGATTACTAAAACAGCTGTGTCGTTTGATTGGTAGAAGATATTTCTGTTCTGATATCAGCTTTAAATAGGATAGAAGTATAAGATTTCATACCTTCTAAGTTTTTTTCTAGCTTGTTGAGAAAGTGGTCAAAGTAGCCGATTTGTGTCAAAATCACATTGTTCACAGTGAATAGAACGTTAGAAGTCACAGTTTCAGAATGTGAGTTTTTAAAGAGTCACTGCCTTTAAAAATCCCCTTGAAAATGGCCTGTGTGGTGTCAATATGAGTCAGACACAGTTAAAgggtgtaaataggataattttgtcCGTCTCGTCTACAACGGAGTTTGGAACATCTGTGCGTCACAATGGGTAAATGAAAGTTGTGTTTTGAGTTGATTTCCTTTTGCCCACCAACTCGCTGAGCAGCTGCGGTGAATGCTCTCTATTCAATGTATTAGACAGTGAGACACATCTGCCCAGCAGCTCTGACTTTGTTTACTTAAGACATGTCGCACATTTTTTTACTTGGGAAATACTCCACCAAACACCTTAATTAGATGTAAAACTGAGCAACTAAAACATCCTCTGCAAAGACTTAAAAATTATTTcatatttcttgagttatcttagatttaTTCTGGGGATTTTGAAGAAGGGAAACAGGCTTCTGCATCTATAgtgtctcatgggggacaaaAATCATTAACCAAATGCAGAATCAGTCAGGAAACACACCGCTAAGactgaaatatgtttttttctaATGAGAAAAACACGTGCCAATCGACGTGTTCAGTGGCTCTTTAACAATGGGAGCTTTAGAATGTAGAAGAAAGTGGGTAAGGTTTATTAGAAGCTTAATAGGTTAAAAAGTATAAATGGTTTCAATCACACTGGTCCTGACCGGCCTGCATGTTTTAAAGGTTGAATTTCTATCTTAAACGGTGTTAAAATAGTGTTCCAAATAATAAGTACAATTTCTTCTGTCGCAAGTTCCATTAATGAAATAGTCCGAAATAAGTTATACCTTATTTAAAGTGTGACTTCTTTCGCAAGTCACAGTAATTCCTCAAATTGATTACAGCTACTGAACCAAAGCCAGTTAGGAGGGGGACAAAGTAATTACAAACATTGGTGCTCTAGCTGCCATGGTTTACGGACATTGATTTCCATTCATCCTGCTGGTGAAAAAGATTTAAAAGAAGGTCCTATTAAGAGTGAAGTTCTTGAGTTAAGCTACAGAGAAATATGAAGTAGCCCCATGTGACATCATCTAGAAAAGACAAAGGGGACTGTACCAGTTCTGGCTGGAGAGGGAGCTGCAGTAACATTCGCCACCAGAGTCATTTTGGGGTGTGTGGTGGTAGGGCTCTGAGCAAGGGACCCTGTTGACAGAAAACAAATGACTTTTCAAGCATTACACAAACAAAGCAGTTGGGTGAAACCTAAACACCACATTACAAGACAGTTGGAAGCACAAAACATGGCTACTGCTGAAATTATTCTCCACAACAATTGAGTAACGTATTCCTAGTAGCAGCCAGGGCTGAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260203 lncRNA downstream 5886 14997217 ~ 14998401 (-) True G227476
TU260199 lncRNA downstream 12881 14990463 ~ 14991406 (-) True G227472
TU260042 lncRNA downstream 104148 14899834 ~ 14900139 (-) True G227340
TU260033 lncRNA downstream 109742 14894249 ~ 14894545 (-) True G227331
TU259902 lncRNA downstream 289454 14714273 ~ 14714833 (-) True G227207
TU260418 lncRNA upstream 140015 15158002 ~ 15171903 (-) False plm
TU260419 lncRNA upstream 140015 15158002 ~ 15171903 (-) True plm
TU260460 lncRNA upstream 147640 15165627 ~ 15165998 (-) True G227707
TU260470 lncRNA upstream 176210 15194197 ~ 15216186 (-) True G227717
TU260486 lncRNA upstream 207839 15225826 ~ 15226093 (-) True G227732
XM_021592051.2 mRNA downstream 170256 14780067 ~ 14834031 (-) False LOC110510856
XM_021592073.2 mRNA downstream 170256 14780067 ~ 14834031 (-) True LOC110510856
XM_021592067.2 mRNA downstream 170257 14780067 ~ 14834030 (-) False LOC110510856
XM_036969961.1 mRNA upstream 5538 15023525 ~ 15035282 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA upstream 5538 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036969951.1 mRNA upstream 5538 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969943.1 mRNA upstream 5538 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036970146.1 mRNA upstream 84366 15102353 ~ 15109931 (-) True LOC118936618
TU259832 other downstream 367577 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 479433 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 479433 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 529121 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1002479 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 518378 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 583028 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 688247 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 769635 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1821402 16839389 ~ 16839839 (-) True G229373

Expression Profile