RNA id: TCONS_00029204


Basic Information

Item Value
RNA id TCONS_00029204
length 2997
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_014797
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24640467 ~ 24745894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGAGCTGGAGGGCTTGGAGTTTGGAAAGTCAGACTTTGTGCTTCTAGATGAAGTGACTATGGAGCAGTTTATGGAGAATTTGAAGTTGAGGTTTGAGAAGAGTCGTATCTACACCTTCATTGGAGAAGTAGTGGTGTCCGTTAACCCTTACAGACATTTGGATATCTATGGGAAGGATGTCATTGAGGACTACAGGGGAAGAGAACTGTATGAGAATCCACCTCACCTCTATGCTGTTGCAGATGCAGCTTATAAAGCCATGAAAAGACGAGCCAAAGACACATGCATTGTTATTTCAGGTGAAAGTGGAGCAGGCAAGACCGAGGCAAGCAAATATATTATGCAATACATTGCAGCGATCACCAACCCTAGCCAGAGGGCAGAGGTCGAGAGTGTGAAGAACGTGCTCCTGAAGTCCAATTGTGTGTTAGAGGCGTTTGGAAATGCAAAGACCAACCGCAATGATAACTCCAGTCGTTTTGGGAAATACATGGACATCAACTTCAACTTTAATGGAGATCCTACGGGAGGACACATCAACAATTACCTGCTGGAGAAATCAAGAGTTGTTCAGCAGCAAGAAGGAGAAAGaaacttccattcattttatcaGTTGTTACGAGGAGGGTCTGATGATTTGCTCAAGTCCTTATATCTACAGAGAGATCCTGCTGAATATACCTACACCAGTCAAGGAGCTTCTGTCACACTTGCATCCAATAATGACTCCCAATGTCATAAAGCTGTGATGGCAGCATTAAAGGTGATTGGCTTTACTGCTGAAGAAATCAGCTCCATCTACAAGACCCTCAGTACCATCCTACACCTGGGTAACCTTCAGTTTACGAGTGATGGCGAACATGTCGTGCTGGTTGGAGAAGACATGCTGAAAAACATTTCTGAGTTGACGTCCACAGAGCCTGAGAACACAAGAAAAGCATTGCTGTATCGCACAGTGGCTACTGGGGGTGGAGAGGTCATTGAAAAAGGACACAGCGAGCAGGAAGCTAGCTATGGAAGAGACGCTTTTGCCAAGGCTTTATATGAGAGGTTATTTGCATGGATTGTTGGTCGGATCAATGGCGTTATTGAAGTAAAAGACTACAATCCTGCCCTCCACGGGAAGAACACTGTTATTGGTGTGCTGGACATTTATGGCTTTGAGATCTTTGACAATAACAGTTTTGAACAGTTTTGCATTAACTACTGCAATGAAAAGCTACAGCAGCTCTTCATTGAGCTAATTCTGCGACAGGAGCAGGAGGAGTACCAGAGAGAGGGAATCACGTGGCAACATATCGAATACTTTAACAATCAGATCATTGTGGATTTAGTGGAGCAGCCTCATAAGGGGATTATCTCTGTTCTGGATGAAGCCTGTCTCATTGCAGGGAAAGTCACAGATACAGTTTGCCTGGACAGCATGAACAAAAAGCTGGGCCAGCATCCTCACTACACCTCCCGGAAACTCTGTCCCGCTGACAAGACTATGGAGTTCAATCGAGATTTTCGTATCCGACACTACGCTGGAGATGTAACGTACTCAGTTGATGGCTTTCTTGATAAGAACAAGGACCCGCTTTTTCAAGATTTCAAGCGACTGATGTACAACAGTTCTGACCCCGTTCTCAAAGAAATGTGGCCTGATGGGAAAATGAGTATTACAGAGGTGACCAAACGGCCTCTGACAGCCGCTACACTCTTCAAAAACTCTATTATTGCTCTAGTCGACAAACTGGCTTGTAAGGAGCCTTACTATGTGCGCTGTATAAAGCCGAATGAGGTGAAGTCTCCCCTGCTGTTTGATGATGGACGCTGTCAGCACCAAGTGGCATATCTGGGACTGCTGGAGAATGTCCGTGTGCGTCGAGCTGGATTTGCCTACCGACAGCCTTATGCACGCTTTCTGCAGAGGTACAAGATGACCTGTGAGTACACGTGGCCTAATCACCTGATGAGCACTGATCAGGAGGCTGTGGAGGCCATAGTGAACCAGCATGGCTTTGAGGATGATGTTGCGTACGGCCTCAACAAAATTTTCGTCAGGACCCCTCGCACACTCTTCACCCTGGAGCAAGAGAGAGCCGCGCTCATCCCCATATTAGTGCTGTTCTTACAGAAGGTTTGGCGAGGTGCATTAGCACGTATGCGATGTCGAAAAATAAGAGCAATTTATACTATAATGGGTTATTATAAATGCTATAAAGTGAAGGCTCACTTCTGGGAAGTGGAGAGACGTTTTGCTAGCGTTCGAAACATGGCAGACTATGGGAAGAGTGTGGAGTGGCCAACACCACCTGCAGCCCTGGCACAGTTCCACAGAATTACACAACACCTGTACCGCCGATGGTGGGCAAGGCAGCTGATCAAAAACATCCCCCCATCTGACATGGCTGAGGTGAGGGCAAAAGTAGCTGCTTTTTCAGCTCTGAGCGGGGAGAGAATGGACTGGGGCTACAGCCGTTCCTGGGAGAGAGACTACTTGGCCAATGCTAAAGACTCTCCTCTGATGAGCTCCAACTTTGTTCGCATCACTAAAGAGCTGAAGAACAAAGACCAGTATGGACAGGTCCTCTTCTCATCCGCTGTCAGGATgCTCAACTGGTTCAACAACACAAAGGACAGAGCTCTACTCATCACCGACAAACATATTTACAGACTGGAGCccaaaaaacactttaaagtgCAGAAACGGATAGCGCTTGATTCGGTGGTTGGTTTAAGCGTAACAAGTGGCAGCGACCAGTTGGTGGTGCTACACACTGCCACTCAAGATGACTTTCTAGTGCACCTGCAGAGGGGTCAACTAAATCCAAATCAAGATCGCGTAGGAGAGTTGAGTACTCCTCTGCCAGTGAAAGTGTGCTCCACTGGACTCCAGGTACAAATGGGCGGCAAACCAAAAAGCATCACTGTAGAGACCAAACCAGGACAGACAATCTCAGACTTCAAGAAAAGTCGAACGGGATTTACCTTACTCCTGCCCCAGTAA

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0030050 vesicle transport along actin filament biological_process
GO:0016459 myosin complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0031982 vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000146 microfilament motor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0030898 actin-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-562 Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Orthologous to human MYO1G (myosin IG).

Ensembl:

ensembl_id ENSDART00000142774

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030234 lncRNA downstream 247435 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00030233 lncRNA downstream 425121 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 494790 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 577240 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 782875 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030236 lncRNA upstream 7214 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA upstream 7214 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029208 lncRNA upstream 11228 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00029217 lncRNA upstream 338948 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA upstream 338948 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029203 mRNA downstream 84518 24546556 ~ 24555949 (-) True XLOC_014796
TCONS_00029202 mRNA downstream 84532 24546152 ~ 24555935 (-) False XLOC_014796
TCONS_00029201 mRNA downstream 84844 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029200 mRNA downstream 155709 24448584 ~ 24484758 (-) True XLOC_014795
TCONS_00029199 mRNA downstream 196600 24419693 ~ 24443867 (-) False XLOC_014794
TCONS_00029206 mRNA upstream 5149 24750466 ~ 24758109 (-) False XLOC_014799
TCONS_00029207 mRNA upstream 7634 24752951 ~ 24757231 (-) False XLOC_014799
TCONS_00029211 mRNA upstream 192819 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029212 mRNA upstream 237355 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029213 mRNA upstream 248953 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029189 other downstream 451724 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 457576 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 500573 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 722333 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029209 other upstream 11526 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 11876 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029214 other upstream 311495 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 401469 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 773103 25518420 ~ 25518540 (-) True XLOC_014813

Expression Profile

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